Ll_transcript_486757

• Id Trinity: TRINITY_DN52321_c2_g1_i12
• Name Transcript: Ll_transcript_486757
• Sequence: CAACAATTTAGTAACCGATAAAGTTTGGCCCTGGGGAGAAAAGAGAAATTCTGGGTGGGTCCTTGCATAGGGGTAGCATCGTAATAAAACCCAAAGCAAG GGCTATTACCTTTTTATCTTCTTGGCCTTGTTCTTCATCAGTCTCTCTCACTTCTGAACTCTCAGCGTTTGTCTCGTGAACACTGGTTATTTTGGTAGAC CAAACCGGCGCCGTTTTAATCTTCTCTTCAATCTTTCATTCTCTCTTCGCTTCTGAACTCAGCGTTTCTATCCCTCATACGGCATCGTTTCGAAGCTCAC CTCATCAGTAGTGTTTCTAACCTGCGCTTTCCGATCACTGCTCCGTTATCGCTGCTGAAATTTTCTGCCTAGCGCAAGGTTACTGAGTTCCATGGAGGAT GACCTCTTTCAAGAACAGAAATTGCCACAAGGTCTCATAAAAGCAATAAAGTTGGATGTCTTAAATGAGGCGGATATAGATAAAATCGCTGCTTTGGAGA TAAATGCAGCCGGGCAGGTCAACTGTTCTGACCTGGGACTCCCAAATCTATCTTCCGAGTGCACAACATGTGGCGGTAAATCTTCGGATAAAAATTCTTG TGAAGGTCATTATGGAGTAATTAAATTTCCTTTTGTCATACTCCATCCATATTTTATGTCAGAGATTGCAAAAATCTTGAACAAAATTTGCCCTGGATGT AAATCTATTCGACGAGAATTACAGAACAAGGCTGCTCAATTACTCTCTGGATTCAAGCAGTTTAACGGTTGCAAATATTGTTCTGGAAATTCTATGGTTC GCTATCCAACAATGAAATTTAGAGTTTCCTCAAATGACCTCTATAGAAGAACTGCAATTATAGCTGAGGTTAATGATAAGGCTCCAAAGAAGAAGTCTTT GGGTCTAGGATTGCCTGATGATTATTGGGATATTATTCCTGTAGATGCTCAACAAGAAGAAAGTTGTATAAAATCAAATAGAAGGGTTTTATCACCTGCC CAGGTTTGCTCTTTGTTGACTGATGTTGATCTAAACTTTATTGAAAAATTTGTTCCGCGAAAGGATTTGCTTTGTCTCAAGTACTTCCCAGTGACACCAA ATTGCCATCGTGTGACAGAGTTTGCACATGCATTTTGTAATGGAAGCCGGTTGAGTTTTGATGACAGGACCAGAAATTGCAAGAAGTTGGTTGATTTTAG GGGTACAGCTAATGAGTTAAGTTCTCGTGTTTTGGATTGCATGAGGATCTCTAAGCTAAATCCTGACAAAACACCAAGTAATAATATTTTTGCCGAGATT CAGAAAAGAAGAGTTGGTGAAAATGCTTGCAATTCATCTGGTTTGAGATGGATGAAAGATGTGGTTCTTGGAAAACGCAATAGTAGTTCATTCCGTACCG TGGTTGTCGGTGATCCAGACCTTGAGCTTAGTGAGGTTGGATTACCTTGTCAGATTGCAGAAAGTTTGGAGGTTTGTGAACATGTGAACAGGCAGAATAG GGAAAAATTGTTTGATTGTTGTGAGTTACGCATGTTAGAGAAGGGACATATAAAGGTCTGCAGAAAGGGTAATCCAATTAAATTGTTTAAGAAGGAAGAC CTTAAGATAGGAGACATATTTTATAGGCCCCTTACTAACGGGGATATAGTGCTGATAAATAGGCCTCCTTCCATACATCAACATTCTATGATTGCCCTCT CAGTTAAGGTCCTTCCGATATCTAATGTGGTATCTATTAACCCAATCTGCTGTTCCCCACTGAGTGGGGATTTTGATGGTGATTGCCTTCATGGGTATAT TCCACAGTCAGTTGGTTCCAGAGTTGAGCTTAGTGAGCTGGTTGCTTTAGATAGGCAATTGATTAATGGGCAAAGTGGTGGAAATTTGCTTTCACTTTCT CAGGATAGTTTAACTGCTGCTTATTTGCTGATGGAAGATGGGGCTCTTTTGAATGTTTACGAAATGCAGCAACTTCAAATGTTTTGCCCTTACAAGTTAA CACTTCCTGCCATTGTAAAAGCTTCTTCGAATAATTCCTCATTTTGGACTGGCAAGCAATTGTTTAGCATGCTCTTGCCTTCAAAATTTGACTACTCTTT TCCTCCGGATGATGTTTTTGTTAAAGATGGGGAGCTTATATCTTCCTCCGAAGCTTCTGGCTGGCTACGTGATTCGGACTGCAATGTTTTCCAGAGTCTT TTGCACCATTTTAAAGGGAAAACTCTGGACTTTTTATATGCTGCACAGAAAGCTCTTTGTGAGTGGTTGTCTATGACAGGTTTTAGTGTTTCCCTGTCAG ATTTGTACCTCTCTTCTGATTCCTATTCGCGGAAAAATATGATGGAGGAAATCTCATATGGTTTACAAGCAGCAGAGGAGGCATGCAACTTCAAACAGTT ACTAGTGGATGATTATTGTGATTTTCTGTCAGGAAATGTTCAAGATATTACTGTTAAAGTGGATCGTCTTAATCATGAAAGGCAAATATCTGCTTCGCTG AGTCAAGTGTCTGTTGATGCTTTTAGACAGGTTTTTCGAAGTATTCAAAGTTTAGCTGACAAATATGCATGCAAGAGCAATACTTTCCTTGCTATGTTTA AGGCTGGAAGCAAGGGTAATTTACAGAAGCTAGTGCAACATTCCATGTGTCTTGGCTTGCAGCATTCTCTGGTTCGTTTGTCATACAGAATTCCCCGCCA ACTTTCTTGTGCTGCTTGGAATAGGCAGAAGAGGCTTGATTCAATCAAGAAGTTTTTAGGAACTCCTCAATCTGTCCAGTCTTACATTCCGTATGCTGTG GTTGAAAACTCTTTTATGACTGGGCTAAATCCACTTGAATGTTTTGTTCATTCAGTGACAAACCGTGATAGCTCTTTCAGTGACAATGCAGATCTTCCTG GAACGCTGACACGCAGACTTATGTTTTTTATGCGTGATTTGTATGATGCATATGATGGAACAGTGAGAAATTTATACGGTAGTCAAGTTATTCAATTTGC TTATGATGCTGATAAGGACTCATCTCCCGATAGCTGTTATCAAGAGTATACCACGGGTGGGGAACCAGTTGGAGCACTTTCTGCTTGTGCGATTTCTGAG GCTGCATATAGTGCTTTGGGTCAGCCAATCAGTCTACTTGAAGCATCACCTCTGCTAAATTTAAAAAGGGTTCTAGAATGTGGTTCAAAGAAAAAAGGTG GTGATCAGACTGTTTCAGTATTCTTGTCCAAGAAACTTGGTAAACAGAGAAATGGGTTTGAGTATGCAGCCTTGGAAATTAAGAATTATTTGGAAAGGAT GATGTTCTCAGACATTGTTTCTACCGTAATGATAATATTCAGCCAGCATTCTTGCAGCCAAGAAAAGTATAGTCCTTGGGTTTGCCATTTCCATCTAGAC AAGGAAATTGTAAAGAAAAGAAAATTTACAATGCATTCTATCATTGATTCTCTTTACCAGAGATGTGACACACTAAGAAAAGAGTCAAAAGTCAATTTTC CTAATTTGGTAATATCAAGCAAGAAGTGTTCTGCAAATAATGGAAAGGAGGGAGAGGATTGTGTTACTGTTACGATTGTTGAAAACTCTGAGGATTCAAT ACAAGTCGATGCTGTTCGGGACTTGATGTTACCCTTGCTTCTTGGAACAGCTATAAAAGGATTTCTGGAGATCAAGAAGGTTGATATTCTCTGGAGTAAT CCGTCGAAAGTATCAAATTCTAGTAACCGTTCTTTTGGTGGCGAATTGTACTTGAAAGTTACTATGTCTAGTGATGGCAGCCGTGGTAGATTCTGGGGTG TACTCATAAACCATTGTCACAAGATAATGCATATGATTGACTGGACACGAAGTCATCCTGATAACATTCATCATTTCTGCTCAGCCTATGGAATAAATGC AGGCTGGCAATATTTTCTCCATAGTTTAGCATCTGCTACATCTGATACCGGCAAGGCAATCCTTCCGAAGCATTTGCGACTTGTTGCCAATAGTCTGTCA GCTAGTGGAGAATTTGTAGGACTAAATGCTAAAGGCATGACACGGCAAAGACAACATGCATCTGTTGCGTCACCCTTTGTGCAAGCATGCTTTTCTAATC CAGGTAGTTCTTTTATAAAAGCTGCTAAGTGTGGAGTCAAGGACAACCTCCGGGGCAGCATAGATGCATTGGCTTGGGGAAACTGTCCGTCCATAGGGAC AAGTGGACAATTTGATATCTTATATGCAGATAAGGGACAAGAGCTTGCTAAATCTGTGGATGTGTATAACCTTCTTGAGGCCAGTTTTGACCAGCTGAAT GAAAAGATTGATACACCTGATGCTCGCAGCTATTCATCTGACAAATATGGTTCTGGGTATAGATATAAAAATGATGGTTATACCATAAAACAGTTTAAGC AGGCAAAAAGCAGTATAAGAAATTTTGTGACTGTGAAGGATATTCAGAAGCTGACTTATGCATCAAGTTCCATACTGAACAATTATTTGATTGATCAGCA ACTAAGTGACAGGGACCTGTCAACGATGCTTCGGGTTTTGCATTTTCATCCACATAAAGATAAGAAGTTTGGCACTGGACCACAGTGCATAAAGGTCGGA CAGCATCCTATATATACGGATACCCGCTGCTTTTTCATAGAACGAACTGATGGGACTGTTGAAGATTTTTCGTACCGCAAGTGCATTCTGGGTGCTCTTG AGATTATTGACCCTGAAAAAGCTAAGAGCCAGAAGAAAAGATGGTCAGGAGATAATGTTGAAAATGAAAAGAGCCAGAAGAAAATATGGTCTGAAGATAA TGTTGAAAAGGCAAAGAGCCAGAAGAAAAGATGGTGGGAAAATAATGTGTAAGCTGTCTCTATTCATGTCCAAACATAATAAGTGACTGGCATTTAATCT GGTGACAGCCACAGACTTGTAAAATATGAGGGGATGTTTTGTCTGAAGAAATCCTTCTAATGCGCAGTTAGAAGGGTAATAATGGTGCCATAACTCTTAC AAATCACAAAAAAACAACATTGTTTTTCCACTTTTGATTTTAAAGAGTCAACTGTAGGGGAAGCATAGTTGTTTTTTGTGGGTTTAGAGTTATGTCATTG GCATTACTCCAGCTGAAAGGTGAATAATCTGGAGCCTTCTTTGTTGTATACTATCTCAAAGCTAGATTGGGTAGTAACTTTAATCAAATGTAGCTTGATG AATTTGTTCGTCCGGTAGAGGCAGTGCTGCGAATCAAGATGAAATTGATAATTATTGTGGCAGCACGGTTTGAAACTAAGAAGATAACGGCCAGAAGGGA GCATACAAGTTGAAAGGCAAGTGGTAGCACATTTATGTAATATGTAACACTAACTTGTTCCTTGTTATGATGAAGAAAGAATGGGGTCTTTACCTATAGC TTCCTTTTGCTACTTCCACTATTAGTTTACTTGCCTCCGATGACGCCCGGCAGAGAAATATGTAGTGGAAGCAGCAACGAGAAGCTTTTAAAGGATTACC ATAGACCAGATGTATTATTGGGTGTGTGGCATTTATATGTATATTTGTTTAGACTATGTTCAAATCCTATGGTGTCTCCTCTGTTCTCCCCTCATGCACA CAAATTGAATGCTAATACCATTTCTTGGTGTATATTTCACCCTTAACGTCCGTGGAAGAGATTTGTTTATTTTTGTGTGTAGTCAACTCCATTTGATGGG ATTCAAGTTTTTTGTACCAAATGTTCCATAATTGAATGTAAAGATTAATCTCTTGGGTCTACTGAAGTTTTTTTATGGCACAAGGCAGTGATTGGTATTT TATTACATGTTATTTAGTTTGATAGAAAGCAACCAGTTAGTTTCTTTGACTAGATTATTTCTTTCCTTTCGCGTTTCGTGAAGTTTCAATGTAG
• Tissue: pods
• Gene name: LI_gene_191748;
• Additional information: details;

Expression of Ll_transcript_486757

FPKM

• PAB: 0.1
• PNAB: 2.4
• PS1: 3.4
• PS2: 1.8
• PS3: 2.5
• PW1: 1.5
• PW2: 1.1
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_486757

• Blastp: DNA-directed RNA polymerase IV subunit 1 from Arabidopsis with 49.83% of identity
• Blastx: DNA-directed RNA polymerase IV subunit 1 from Arabidopsis with 49.83% of identity
• Eggnog: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity)(COG0086)
• Kegg: Link to kegg annotations (AT1G63020)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019421599.1)
• Pfam: RNA polymerase Rpb1, domain 1 (PF04997.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;