Ll_transcript_486760

• Id Trinity: TRINITY_DN52321_c2_g1_i14
• Name Transcript: Ll_transcript_486760
• Sequence: TAACCCTTTGTGGGGCGTGATTCTAGACCAGTATTATCGTAATATAAAAGAAAAAGGCAAGGGTTAGAGACAGATGATGAAGAAAAGCTATAACCTTTTC TCCTGCTCCTGAACTCCGCGTTTTTCTCGTGAACCGGCGCCGTTTTAATTTTCTCTTCACTCTTTCACTCTTCTTCGCTACTTCACTATCCTTAAACTCT CTCGCTCCTCTTTCTCTCTCTATCTCCCTCGTTTTTCGCGCTCACACGGCGTCGCTTTGAAGCTTACCTCGTAGTTACTCTGAACTTCGTTTTCCGATCA TTCTTCGTTCTCCGAAGCGCATTCACTCGCTTCATCCAAGCTGCTTGAATATTTCTGCCTAGTGCAAGGTTACCAAGTTCCATGGAGAATGACCTCTTTC AAGAGCAGAAATTGCCACAAGGTCTCATAAAAGCAATCAAGTTTGATGTCTTAATTGAGGCAGATATAGAAAAAATGGTTGCTTTGGAGATAAATGCAGC CGGGCAGGTCAACTGTTCTGACCTGGGACTCCCAAATTTATCTTCTGAGTGCACTACATGTGGTGCTAAATCTTTCGATAAAAATTCTTGTGAAGGTCAT TGTGGAATGATCAAATTTCCTTTTGGCATACTACATCCATATTTTATGTCAGAGATTGCACAAATCTTGAACAAAATTTGCCCCGGATGTAAATCTATTC GACGAGAAATACAGAACAAGGCTGCTCAAATTCTGTCTGGAGTCAAGCAGCTTAACGGTTGCAAATATTGTTCTGGAAGTTTTATGGTTCGCTATCCAAC AATGAAATTCAGAGTTTCCTCAAATGACCTCTACAGAAGAACTGCAATTATTGCTGAGGTTAATGATAAGGCTCCAAAGAAGAAATCTTTTGGTCTAGGA TTACCTGATGATTATTGGGATATTATTCCTGCAGATGCTCAACAAGAAGAAGGTTTTACAAAATCAAATAGAATGGTTTTATCACCTGCCCAGGTTTATT CGTTGTTGGCTGATGTTGATCCAAACTTTATTAAAAAATTTGTGCCACGGTTGGATTTACTTGGCCTCAACTACTTCCCAGTGACACCAAATTGTCATCG TGTGACAGAATTCGCACATGCATTTTGTAATGGGAACCGGTTGAGTTTTGATGACAGGACTAGAAATTGTAAGAAATTGGTTGATTTCAGGGGTACAGCT AATGAGTTAAGTTCTCGTGTTTTGGATTGCTTGAGGATCTCTAAGTTAAATCCTGATAAAACACCAAGTAGTAATATCTTTGCTGATATTCAGCAAAGAA GAGTTGGTGAAAATGGTTGCAATTCATCTGGTTTGAGATGGATGAAGGATGTGGTTCTTGGAAAACGCAATAGTAGTTCATTCCGTACTGTGGTTGTCGG TGATCCAGACCTTGAGCTTAGCGAGATTGGACTACCTTGTCAGATTGCAGAAAGTTTGGAGGTTTGTGAACATGTAAACAGGCAGAATAAGGAAAAATTG CTTGATTGTTGTGAGTTACGCATGTTAGAGAAGGGGCATATAAGCGTCCGCAGAAAGGGTAGTCTAACTAAATTGTACAAAAAGGAAGATCTTAAGATAG GAGACATTATATATAGGCCCCTTACTGATGGGGATAAACTGCTGATAAATAGGCCTCCTTCCATACATCAACATTCCATGATTGCCCTCTCGGTTAGGGT CCTTCCTATATCTAATGTGGTATCTATTAACCCAATTTGCTGTTCCCCACTGCGTGGGGATTTTGATGGTGATTGTCTTCATGGGTATATTCCACAATCA GTTAGTGCTAGAGTTGAGCTTACTGAGCTAGTTGATTTAGATAGGCAATTGATTAATGGGCAAAGTGGTAGAAATCTGCTTTCACTGTCTCAGGATAGTT TAACTGCTGCTTATTTGCTGATGGAAGATGGGGCTCTTTTGAATGTTTACGAAATGCAGCAACTTCAAATGTTTTGCCCTTACAAGTTAACACTTCCTGC CATTGTAAAAGCTTCTTCGAATAATTCCTCATTTTGGACTGGCAAGCAATTGTTTAGCATGCTCTTGCCTTCAAAATTTGACTACTCTTTTCCTCCGGAT GATGTTTTTGTTAAAGATGGGGAGCTTATATCTTCCTCCGAAGCTTCTGGCTGGCTACGTGATTCGGACTGCAATGTTTTCCAGAGTCTTTTGCACCATT TTAAAGGGAAAACTCTGGACTTTTTATATGCTGCACAGAAAGCTCTTTGTGAGTGGTTGTCTATGACAGGTTTTAGTGTTTCCCTGTCAGATTTGTACCT CTCTTCTGATTCCTATTCGCGGAAAAATATGATGGAGGAAATCTCATATGGTTTACAAGCAGCAGAGGAGGCATGCAACTTCAAACAGTTACTAGTGGAT GATTATTGTGATTTTCTGTCAGGAAATGTTCAAGATATTACTGTTAAAGTGGATCGTCTTAATCATGAAAGGCAAATATCTGCTTCGCTGAGTCAAGTGT CTGTTGATGCTTTTAGACAGGTTTTTCGAAGTATTCAAAGTTTAGCTGACAAATATGCATGCAAGAGCAATACTTTCCTTGCTATGTTTAAGGCTGGAAG CAAGGGTAATTTACAGAAGCTAGTGCAACATTCCATGTGTCTTGGCTTGCAGCATTCTCTGGTTCGTTTGTCATACAGAATTCCCCGCCAACTTTCTTGT GCTGCTTGGAATAGGCAGAAGAGGCTTGATTCAATCAAGAAGTTTTTAGGAACTCCTCAATCTGTCCAGTCTTACATTCCGTATGCTGTGGTTGAAAACT CTTTTATGACTGGGCTAAATCCACTTGAATGTTTTGTTCATTCAGTGACAAACCGTGATAGCTCTTTCAGTGACAATGCAGATCTTCCTGGAACGCTGAC ACGCAGACTTATGTTTTTTATGCGTGATTTGTATGATGCATATGATGGAACAGTGAGAAACTTATACGGTAATCAAGTTATTCAATTTGCTTATGATACC GACAAGGACTCATCTTCTGATAGATGTTACCAAGAATATACCATGGATGGTGAACCAGTTGGAGCCCTTTCTGCTTGTGCAATTTCTGAGGCTGCATACA GTGTTTTGGGTCAGCCAATCAGTCTGCTAGAAGCATCACCTCTGTTAAATTTAAAAAATGTTTTAGAATGTGGTTCAAAGAAAAGAGGCGGTGATCAGAC TGTGTCATTATTCTTGTCCAAGAAACTTGCTAAACATAGATATGGGTTTGAGTATGCAGCCTTGGAAATTAAGAATTATTTGGAAAGGATGATGTTCTCA GACATTGTTTCTACGGTAATGATAATATTCACCCCACAGTCTTGCAGCCAAGAAAAGTATAGTCCTTGGGTTTGCCATTTCCATCTAGACAGGGAAATTG TAAAGAGAAGAAAATTAAAAATGCATTCTATCATTGACTCTCTTTACCAGAGGTGTGACTCACTAAGAAAAGAGTCAAAAGTCACTTTTCCCAATTTGAT TATATCAAGCAAGAAGTGTTCTGCAAATAAAAGGAAGGAGGGAGAAGATTGTGTCACTGTTACAATTGTTGAAAACTCTGGGGATTCTTTACAAGTCGAT GCTGTTCGGGAGTTGATGTTACCTTTGCTTCTTGGAGCAGCTATAAAAGGATTTCTGGAGATCACAAAGGTTGATATTCTCTGGAGTAATCTGTCGGAAG TATCAAATTCTAGTAACGGTTCTTTAGGTGGTGAACTGTACTTGAAAGTTACTATCTCCAGTGGTGGTGGCAGTGGTAGATTCTGGGGATTTCTCATAAA CTGTTGTCACAAGATAATGCATATGGTTGACTGGACACGAAGTCATCCCGATAACATTCATCATTTCTGCTCAGCCTATGGAATAAATGCAGGCTGGCAA TATTTTCTCCGCAGTTTGGCATCTGCTACATCTGCTACTGGAAAGACAATCCTTCCTAAGCATCTGCGTCTTGTTGCCAATAGTCTGTCAGCTACTGGGG AGTTTGTAGGATTAAATGCTAAAGGCATGAAAAGGCAAAGACAACATGCATCTGTCGCGTCACCCTTTGTGCAAGCATGCTTTTCTAATCCAGGTAGTTG TTTTATAAATGCTGCTAAGTCCGGAGTCAAGGACAACCTCCGAGGCAGCATAGATGCATTGGCTTGGGGGAATTGTCCGTCCATAGGGACAAGTGGACAA TTTGATATCTTTTATGCAGATAAGGGACAAGAGATTGCTAAATCTGTAGATGTGTATAACCTACTTGAAGCAAGTATTGACCAACTGAATGAAAAGATTG ATACCCCTGATGCTCACAACTATTCATTTGACAAATGCGGCTCTGGGTATAGATACAAAAATGGTGATTCTACCTTGAAACAGTTTAAGCAAGTGAAAAG CAATATAAGAAATTTTGTGACTGTAAAGGATATTCAGAAACTGACTTATGCATCAAGGTCCATATTGAACAATTATTTGATTGATCAGCAACTAAGTGAC AGGGACTTGTCAACTATGCTGAGGGTTTTGCATTTTCACCCGCATAAAGATGAGAAGTTTGGTGCCGGACCACAGGGCATAAAGGTTGGGCATCATCCTA TATATAAGGATACCCGCTGTTTCTTCATAGAACGAACTGATGGGAC
• Tissue: pods
• Gene name: LI_gene_191748;
• Additional information: details;

Expression of Ll_transcript_486760

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 1.6
• PS2: 0.4
• PS3: 0.4
• PW1: 1.1
• PW2: 0.2
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_486760

• Blastp: DNA-directed RNA polymerase IV subunit 1 from Arabidopsis with 50.49% of identity
• Blastx: DNA-directed RNA polymerase IV subunit 1 from Arabidopsis with 50.66% of identity
• Eggnog: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity)(COG0086)
• Kegg: Link to kegg annotations (AT1G63020)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019421599.1)
• Pfam: RNA polymerase Rpb1, domain 1 (PF04997.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;