| Id Trinity | TRINITY_DN52321_c2_g1_i20 |
|---|---|
| Name Transcript | Ll_transcript_486767 |
| Sequence | TAACCCTTTGTGGGGCGTGATTCTAGACCAGTATTATCGTAATATAAAAGAAAAAGGCAAGGGTTAGAGACAGATGATGAAGAAAAGCTATAACCTTTTC TCCTGCTCCTGAACTCCGCGTTTTTCTCGTGAACCGGCGCCGTTTTAATTTTCTCTTCACTCTTTCACTCTTCTTCGCTACTTCACTATCCTTAAACTCT CTCGCTCCTCTTTCTCTCTCTATCTCCCTCGTTTTTCGCGCTCACACGGCGTCGCTTTGAAGCTTACCTCGTAGTTACTCTGAACTTCGTTTTCCGATCA TTCTTCGTTCTCCGAAGCGCATTCACTCGCTTCATCCAAGCTGCTTGAATATTTCTGCCTAGTGCAAGGTTACCAAGTTCCATGGAGAATGACCTCTTTC AAGAGCAGAAATTGCCACAAGGTCTCATAAAAGCAATCAAGTTTGATGTCTTAATTGAGGCAGATATAGAAAAAATGGTTGCTTTGGAGATAAATGCAGC CGGGCAGGTCAACTGTTCTGACCTGGGACTCCCAAATCTATCTTCCGAGTGCACAACATGTGGCGGTAAATCTTCGGATAAAAATTCTTGTGAAGGTCAT TATGGAGTAATTAAATTTCCTTTTGTCATACTCCATCCATATTTTATGTCAGAGATTGCAAAAATCTTGAACAAAATTTGCCCTGGATGTAAATCTATTC GACGAGAATTACAGAACAAGGCTGCTCAATTACTCTCTGGATTCAAGCAGTTTAACGGTTGCAAATATTGTTCTGGAAATTCTATGGTTCGCTATCCAAC AATGAAATTTAGAGTTTCCTCAAATGACCTCTATAGAAGAACTGCAATTATAGCTGAGGTTAATGATAAGGCTCCAAAGAAGAAGTCTTTGGGTCTAGGA TTGCCTGATGATTATTGGGATATTATTCCTGTAGATGCTCAACAAGAAGAAAGTTGTATAAAATCAAATAGAAGGGTTTTATCACCTGCCCAGGTTTGCT CTTTGTTGACTGATGTTGATCTAAACTTTATTGAAAAATTTGTTCCGCGAAAGGATTTGCTTTGTCTCAAGTACTTCCCAGTGACACCAAATTGCCATCG TGTGACAGAGTTTGCACATGCATTTTGTAATGGAAGCCGGTTGAGTTTTGATGACAGGACCAGAAATTGCAAGAAGTTGGTTGATTTTAGGGGTACAGCT AATGAGTTAAGTTCTCGTGTTTTGGATTGCATGAGGATCTCTAAGCTAAATCCTGACAAAACACCAAGTAATAATATTTTTGCCGAGATTCAGAAAAGAA GAGTTGGTGAAAATGCTTGCAATTCATCTGGTTTGAGATGGATGAAAGATGTGGTTCTTGGAAAACTCAATAGTAGTTCATTCCGTACCGTGGTTGTCGG TGATCCAGACCTTGAGCTTAGTGAGGTTGGATTACCTTGTCAGATTGCAGAAAGTTTGGAGGTTTGTGAACATGTGAACAGGCAGAATAGGGAAAAATTG TTTGATTGTTGTGAGTTACGCATGTTAGAGAAGGGACATATAAAGGTCTGCAGAAAGGGTAATCCAATTAAATTGTTTAAGAAGGAAGACCTTAAGATAG GAGACATATTTTATAGGCCCCTTACTAACGGGGATATAGTGCTGATAAATAGGCCTCCTTCCATACATCAACATTCTATGATTGCCCTCTCAGTTAAGGT CCTTCCGATATCTAATGTGGTATCTATTAACCCAATCTGCTGTTCCCCACTGAGTGGGGATTTTGATGGTGATTGCCTTCATGGGTATATTCCACAGTCA GTTGGTTCCAGAGTTGAGCTTAGTGAGCTGGTTGCTTTAGATAGGCAATTGATTAATGGGCAAAGTGGTGGAAATTTGCTTTCACTTTCTCAGGATAGTT TAACTGCTGCTTATTTGCTGATGGAAGATGGGGCTCTTTTGAATGTTTACGAAATGCAGCAACTTCAAATGTTTTGCCCTTACAAGTTAACACTTCCTGC CATTGTAAAAGCTTCTTCGAATAATTCCTCATTTTGGACTGGCAAGCAATTGTTTAGCATGCTCTTGCCTTCAAAATTTGACTACTCTTTTCCTCCGGAT GATGTTTTTGTTAAAGATGGGGAGCTTATATCTTCCTCCGAAGCTTCTGGCTGGCTACGTGATTCGGACTGCAATGTTTTCCAGAGTCTTTTGCACCATT TTAAAGGGAAAACTCTGGACTTTTTATATGCTGCACAGAAAGCTCTTTGTGAGTGGTTGTCTATGACAGGTTTTAGTGTTTCCCTGTCAGATTTGTACCT CTCTTCTGATTCCTATTCGCGGAAAAATATGATGGAGGAAATCTCATATGGTTTACAAGCAGCAGAGGAGGCATGCAACTTCAAACAGTTACTAGTGGAT GATTATTGTGATTTTCTGTCAGGAAATGTTCAAGATATTACTGTTAAAGTGGATCGTCTTAATCATGAAAGGCAAATATCTGCTTCGCTGAGTCAAGTGT CTGTTGATGCTTTTAGACAGGTTTTTCGAAGTATTCAAAGTTTAGCTGACAAATATGCATGCAAGAGCAATACTTTCCTTGCTATGTTTAAGGCTGGAAG CAAGGGTAATTTACAGAAGCTAGTGCAACATTCCATGTGTCTTGGCTTGCAGCATTCTCTGGTTCGTTTGTCATACAGAATTCCCCGCCAACTTTCTTGT GCTGCTTGGAATAGGCAGAAGAGGCTTGATTCAATCAAGAAGTTTTTAGGAACTCCTCAATCTGTCCAGTCTTACATTCCGTATGCTGTGGTTGAAAACT CTTTTATGACTGGGCTAAATCCACTTGAATGTTTTGTTCATTCAGTGACAAACCGTGATAGCTCTTTCAGTGACAATGCAGATCTTCCTGGAACGCTGAC ACGCAGACTTATGTTTTTTATGCGTGATTTGTATGATGCATATGATGGAACAGTGAGAAATTTATACGGTAGTCAAGTTATTCAATTTGCTTATGATGCT GATAAGGACTCATCTCCCGATAGCTGTTATCAAGAGTATACCACGGGTGGGGAACCAGTTGGAGCACTTTCTGCTTGTGCGATTTCTGAGGCTGCATATA GTGCTTTGGGTCAGCCAATCAGTCTACTTGAAGCATCACCTCTGCTAAATTTAAAAAGGGTTCTAGAATGTGGTTCAAAGAAAAAAGGTGGTGATCAGAC TGTTTCAGTATTCTTGTCCAAGAAACTTGGTAAACAGAGAAATGGGTTTGAGTATGCAGCCTTGGAAATTAAGAATTATTTGGAAAGGATGATGTTCTCA GACATTGTTTCTACCGTAATGATAATATTCAGCCAGCATTCTTGCAGCCAAGAAAAGTATAGTCCTTGGGTTTGCCATTTCCATCTAGACAAGGAAATTG TAAAGAAAAGAAAATTTACAATGCATTCTATCATTGATTCTCTTTACCAGAGATGTGACACACTAAGAAAAGAGTCAAAAGTCAATTTTCCTAATTTGGT AATATCAAGCAAGAAGTGTTCTGCAAATAATGGAAAGGAGGGAGAGGATTGTGTTACTGTTACGATTGTTGAAAACTCTGAGGATTCAATACAAGTCGAT GCTGTTCGGGACTTGATGTTACCCTTGCTTCTTGGAACAGCTATAAAAGGATTTCTGGAGATCAAGAAGGTTGATATTCTCTGGAGTAATCCGTCGAAAG TATCAAATTCTAGTAACCGTTCTTTTGGTGGCGAATTGTACTTGAAAGTTACTATGTCTAGTGATGGCAGCCGTGGTAGATTCTGGGGTGTACTCATAAA CCATTGTCACAAGATAATGCATATGATTGACTGGACACGAAGTCATCCTGATAACATTCATCATTTCTGCTCAGCCTATGGAATAAATGCAGGCTGGCAA TATTTTCTCCATAGTTTAGCATCTGCTACATCTGATACCGGCAAGGCAATCCTTCCGAAGCATTTGCGACTTGTTGCCAATAGTCTGTCAGCTAGTGGAG AATTTGTAGGACTAAATGCTAAAGGCATGACACGGCAAAGACAACATGCATCTGTTGCGTCACCCTTTGTGCAAGCATGCTTTTCTAATCCAGGTAGTTC TTTTATAAAAGCTGCTAAGTGTGGAGTCAAGGACAACCTCCGGGGCAGCATAGATGCATTGGCTTGGGGAAACTGTCCGTCCATAGGGACAAGTGGACAA TTTGATATCTTATATGCAGATAAGGGACAAGAGCTTGCTAAATCTGTGGATGTGTATAACCTTCTTGAGGCCAGTTTTGACCAGCTGAATGAAAAGATTG ATACACCTGATGCTCGCAGCTATTCATCTGACAAATATGGTTCTGGGTATAGATATAAAAATGATGGTTATACCATAAAACAGTTTAAGCAGGCAAAAAG CAGTATAAGAAATTTTGTGACTGTGAAGGATATTCAGAAGCTGACTTATGCATCAAGTTCCATACTGAACAAGTAAGACAATCAACATATAGTTTTTCTA TCCTCTAATATTGTTATCTATTAATGCCATAAAGCAGTATATATTCTATGGTAGTGACTTTCACGTTATCTATATTGTGTTTTGCATTGCATAGAATAGA GCAACTAGAAGATTGTATTAGTACTCCAGCCATGGTAGTCTCTTGCAGTTTGGAGCTGCTATCAAATATCTTAGAAAATAGTTCACAATATTTCTATTTT AGGG BLAST |
| Tissue | pods |
| Gene name | LI_gene_191748; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_486767
| Blastp | DNA-directed RNA polymerase IV subunit 1 from Arabidopsis with 51.86% of identity |
|---|---|
| Blastx | DNA-directed RNA polymerase IV subunit 1 from Arabidopsis with 51.86% of identity |
| Eggnog | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity)(COG0086) |
| Kegg | Link to kegg annotations (AT1G63020) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421599.1) |
| Pfam | RNA polymerase Rpb1, domain 1 (PF04997.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |