Ll_transcript_486753

• Id Trinity: TRINITY_DN52321_c2_g1_i8
• Name Transcript: Ll_transcript_486753
• Sequence: CAACAATTTAGTAACCGATAAAGTTTGGCCCTGGGGAGAAAAGAGAAATTCTGGGTGGGTCCTTGCATAGGGGTAGCATCGTAATAAAACCCAAAGCAAG GGCTATTACCTTTTTATCTTCTTGGCCTTGTTCTTCATCAGTCTCTCTCACTTCTGAACTCTCAGCGTTTGTCTCGTGAACACTGGTTATTTTGGTAGAC CAAACCGGCGCCGTTTTAATCTTCTCTTCAATCTTTCATTCTCTCTTCGCTTCTGAACTCAGCGTTTCTATCCCTCATACGGCATCGTTTCGAAGCTCAC CTCATCAGTAGTGTTTCTAACCTGCGCTTTCCGATCACTGCTCCGTTATCGTAAGCGCATTTAGTCGCTTCTCATAAGCTGCTGAAATTTTCTGCCTAGC GCAAGGTTACTGAGTTCCATGGAGGATGACCTCTTTCAAGAACAGAAATTGCCACAAGGTCTCATAAAAGCAATAAAGTTGGATGTCTTAAATGAGGCGG ATATAGATAAAATCGCTGCTTTGGAGATAAATGCAGCCGGGCAGGTCAACTGTTCTGACCTGGGACTCCCAAATCTATCTTCCGAGTGCACAACATGTGG CGGTAAATCTTCGGATAAAAATTCTTGTGAAGGTCATTATGGAGTAATTAAATTTCCTTTTGTCATACTCCATCCATATTTTATGTCAGAGATTGCAAAA ATCTTGAACAAAATTTGCCCTGGATGTAAATCTATTCGACGAGAATTACAGAACAAGGCTGCTCAATTACTCTCTGGATTCAAGCAGTTTAACGGTTGCA AATATTGTTCTGGAAATTCTATGGTTCGCTATCCAACAATGAAATTTAGAGTTTCCTCAAATGACCTCTATAGAAGAACTGCAATTATAGCTGAGGTTAA TGATAAGGCTCCAAAGAAGAAGTCTTTGGGTCTAGGATTGCCTGATGATTATTGGGATATTATTCCTGTAGATGCTCAACAAGAAGAAAGTTGTATAAAA TCAAATAGAAGGGTTTTATCACCTGCCCAGGTTTGCTCTTTGTTGACTGATGTTGATCTAAACTTTATTGAAAAATTTGTTCCGCGAAAGGATTTGCTTT GTCTCAAGTACTTCCCAGTGACACCAAATTGCCATCGTGTGACAGAGTTTGCACATGCATTTTGTAATGGAAGCCGGTTGAGTTTTGATGACAGGACCAG AAATTGCAAGAAGTTGGTTGATTTTAGGGGTACAGCTAATGAGTTAAGTTCTCGTGTTTTGGATTGCATGAGGATCTCTAAGCTAAATCCTGACAAAACA CCAAGTAATAATATTTTTGCCGAGATTCAGAAAAGAAGAGTTGGTGAAAATGCTTGCAATTCATCTGGTTTGAGATGGATGAAAGATGTGGTTCTTGGAA AACGCAATAGTAGTTCATTCCGTACCGTGGTTGTCGGTGATCCAGACCTTGAGCTTAGTGAGGTTGGATTACCTTGTCAGATTGCAGAAAGTTTGGAGGT TTGTGAACATGTGAACAGGCAGAATAGGGAAAAATTGTTTGATTGTTGTGAGTTACGCATGTTAGAGAAGGGACATATAAAGGTCTGCAGAAAGGGTAAT CCAATTAAATTGTTTAAGAAGGAAGACCTTAAGATAGGAGACATATTTTATAGGCCCCTTACTAACGGGGATATAGTGCTGATAAATAGGCCTCCTTCCA TACATCAACATTCTATGATTGCCCTCTCAGTTAAGGTCCTTCCGATATCTAATGTGGTATCTATTAACCCAATCTGCTGTTCCCCACTGAGTGGGGATTT TGATGGTGATTGCCTTCATGGGTATATTCCACAGTCAGTTGGTTCCAGAGTTGAGCTTAGTGAGCTGGTTGCTTTAGATAGGCAATTGATTAATGGGCAA AGTGGTGGAAATTTGCTTTCACTTTCTCAGGATAGTTTAACTGCTGCTTATTTGCTGATGGAAGATGGGGCTCTTTTGAATGTTTACGAAATGCAGCAAC TTCAAATGTTTTGCCCTTACAAGTTAACACTTCCTGCCATTGTAAAAGCTTCTTCGAATAATTCCTCATTTTGGACTGGCAAGCAATTGTTTAGCATGCT CTTGCCTTCAAAATTTGACTACTCTTTTCCTCCGGATGATGTTTTTGTTAAAGATGGGGAGCTTATATCTTCCTCCGAAGCTTCTGGCTGGCTACGTGAT TCGGACTGCAATGTTTTCCAGAGTCTTTTGCACCATTTTAAAGGGAAAACTCTGGACTTTTTATATGCTGCACAGAAAGCTCTTTGTGAGTGGTTGTCTA TGACAGGTTTTAGTGTTTCCCTGTCAGATTTGTACCTCTCTTCTGATTCCTATTCGCGGAAAAATATGATGGAGGAAATCTCATATGGTTTACAAGCAGC AGAGGAGGCATGCAACTTCAAACAGTTACTAGTGGATGATTATTGTGATTTTCTGTCAGGAAATGTTCAAGATATTACTGTTAAAGTGGATCGTCTTAAT CATGAAAGGCAAATATCTGCTTCGCTGAGTCAAGTGTCTGTTGATGCTTTTAGACAGGTTTTTCGAAGTATTCAAAGTTTAGCTGACAAATATGCATGCA AGAGCAATACTTTCCTTGCTATGTTTAAGGCTGGAAGCAAGGGTAATTTACAGAAGCTAGTGCAACATTCCATGTGTCTTGGCTTGCAGCATTCTCTGGT TCGTTTGTCATACAGAATTCCCCGCCAACTTTCTTGTGCTGCTTGGAATAGGCAGAAGAGGCTTGATTCAATCAAGAAGTTTTTAGGAACTCCTCAATCT GTCCAGTCTTACATTCCGTATGCTGTGGTTGAAAACTCTTTTATGACTGGGCTAAATCCACTTGAATGTTTTGTTCATTCAGTGACAAACCGTGATAGCT CTTTCAGTGACAATGCAGATCTTCCTGGAACGCTGACACGCAGACTTATGTTTTTTATGCGTGATTTGTATGATGCATATGATGGAACAGTGAGAAACTT ATACGGTAATCAAGTTATTCAATTTGCTTATGATACCGACAAGGACTCATCTTCTGATAGATGTTACCAAGAATATACCATGGATGGTGAACCAGTTGGA GCCCTTTCTGCTTGTGCAATTTCTGAGGCTGCATACAGTGTTTTGGGTCAGCCAATCAGTCTGCTAGAAGCATCACCTCTGTTAAATTTAAAAAATGTTT TAGAATGTGGTTCAAAGAAAAGAGGCGGTGATCAGACTGTGTCATTATTCTTGTCCAAGAAACTTGCTAAACATAGATATGGGTTTGAGTATGCAGCCTT GGAAATTAAGAATTATTTGGAAAGGATGATGTTCTCAGACATTGTTTCTACGGTAATGATAATATTCACCCCACAGTCTTGCAGCCAAGAAAAGTATAGT CCTTGGGTTTGCCATTTCCATCTAGACAGGGAAATTGTAAAGAGAAGAAAATTAAAAATGCATTCTATCATTGACTCTCTTTACCAGAGGTGTGACTCAC TAAGAAAAGAGTCAAAAGTCACTTTTCCCAATTTGATTATATCAAGCAAGAAGTGTTCTGCAAATAAAAGGAAGGAGGGAGAAGATTGTGTCACTGTTAC AATTGTTGAAAACTCTGGGGATTCTTTACAAGTCGATGCTGTTCGGGAGTTGATGTTACCTTTGCTTCTTGGAGCAGCTATAAAAGGATTTCTGGAGATC ACAAAGGTTGATATTCTCTGGAGTAATCTGTCGGAAGTATCAAATTCTAGTAACGGTTCTTTAGGTGGTGAACTGTACTTGAAAGTTACTATCTCCAGTG GTGGTGGCAGTGGTAGATTCTGGGGATTTCTCATAAACTGTTGTCACAAGATAATGCATATGGTTGACTGGACACGAAGTCATCCCGATAACATTCATCA TTTCTGCTCAGCCTATGGAATAAATGCAGGCTGGCAATATTTTCTCCGCAGTTTGGCATCTGCTACATCTGCTACTGGAAAGACAATCCTTCCTAAGCAT CTGCGTCTTGTTGCCAATAGTCTGTCAGCTACTGGGGAGTTTGTAGGATTAAATGCTAAAGGCATGAAAAGGCAAAGACAACATGCATCTGTCGCGTCAC CCTTTGTGCAAGCATGCTTTTCTAATCCAGGTAGTTGTTTTATAAATGCTGCTAAGTCCGGAGTCAAGGACAACCTCCGAGGCAGCATAGATGCATTGGC TTGGGGGAATTGTCCGTCCATAGGGACAAGTGGACAATTTGATATCTTTTATGCAGATAAGGGACAAGAGATTGCTAAATCTGTAGATGTGTATAACCTA CTTGAAGCAAGTATTGACCAACTGAATGAAAAGATTGATACCCCTGATGCTCACAACTATTCATTTGACAAATGCGGCTCTGGGTATAGATACAAAAATG GTGATTCTACCTTGAAACAGTTTAAGCAAGTGAAAAGCAATATAAGAAATTTTGTGACTGTAAAGGATATTCAGAAACTGACTTATGCATCAAGGTCCAT ATTGAACAATTATTTGATTGATCAGCAACTAAGTGACAGGGACTTGTCAACTATGCTGAGGGTTTTGCATTTTCACCCGCATAAAGATGAGAAGTTTGGT GCCGGACCACAGGGCATAAAGGTTGGGCATCATCCTATATATAAGGATACCCGCTGTTTCTTCATAGAACGAACTGATGGGAC
• Tissue: pods
• Gene name: LI_gene_191748;
• Additional information: details;

Expression of Ll_transcript_486753

FPKM

• PAB: 0
• PNAB: 0.5
• PS1: 0.4
• PS2: 0.2
• PS3: 0.2
• PW1: 0
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_486753

• Blastp: DNA-directed RNA polymerase IV subunit 1 from Arabidopsis with 50.17% of identity
• Blastx: DNA-directed RNA polymerase IV subunit 1 from Arabidopsis with 50.35% of identity
• Eggnog: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity)(COG0086)
• Kegg: Link to kegg annotations (AT1G63020)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019445105.1)
• Pfam: RNA polymerase Rpb1, domain 1 (PF04997.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;