Ll_transcript_486527

• Id Trinity: TRINITY_DN52336_c2_g3_i7
• Name Transcript: Ll_transcript_486527
• Sequence: ACGAGTCAGCTAAAATGCCTTCAGCCGAGCATCAGGAGGAAGCAGTAAAGAAAAAATATGGAGGGCTCATGCCCAAAAAGCCACCACTCATATCTAAGAG TTGCAACAGTGGTATCTAGAGCAAGTGTTAGTGATCTTGGTGATCCTGTGGTAGGAAGGAAGAAGGAGCAGCAAGCATGGCAGGGAACACTAGTTTTACA ATGATTCTACCAACTCTAAATGGCAAGAATTATGAAAGATGGCAAGTGCAGATGAAGGTTCTTTTTGGTTATCAAGAGGTGCTTGATGTTGTGCAAGGAG ACTTTCAGATGGTGGATGAGGATGCCACTGAAGCTCAGAGAGCTTTATTTAGAGAGTGCACGAAGAGGGACTGCAAAGCCTTGGCCATGATTCATCAATG TGTAGATGATTCCAACTTTGAGAAGATTGCAGACTCCAAAACCTCAAAGGAAGCCTGGGACAATCTTGCAAGGTGCTATGCTGGTGCAGAGAAAGTCAAG AAGGTAAAGTTGCAGACATTCAAGAGAGAATTTGAGCTTTTGCAAATGAGGGATGATGACACCATTGGTGAGTATTTCAATAAACTCAAATCCCTAACTA ATCAAATGAAGGGACGTGGTGCATCATTGAAGGATCAGGACATAGTTGAAAAAGTGTTGAGGACTTTAAGTCCTAAGTTTGATCATGTGGTTGTTGCAAT TGAAGAATCAAAGAATCTTGATGATATCAAGGTTGAGGCATTGCAGAGCTCTTTGCAAGCTCATGAGCAGAGAATTAAAGAGAGGAACAATGCAAGAACA AGTGATCAAGCACTCCAAGCTCAGCAATTCAAAAGCCAGCCTTGGAAGAAGAATGAGCAAAACAAAGTGAAAGGCAGATGGAGGAATGAGAAAGACAAAA CCTGTGAAGGAATCAACTCAGGTTCCAACACAAGTCCTCCATCAAGATTTGACAAGAAAAACTACAATGCAAGGAAGAAAGCTGATAAAAGGAAGGTGCA GTGTTTCAAATGCAAAAATCTTGGTCACTATGCATCTGAATGAAGGTTCAAGGGAACTGGTTCAGTTGCTGATGCAAGATTGGCAAAAGAAGAAGAATCT GATGAAGAACAAGTGCTGCTCATGGTGACCACTGAGGGAGAAAACAGCAGAGATGATTGCTGGTACTTGGACACAGGCTGCTCTAACCACATGACTGGTC ACAAGGAATGGTTTGTGAGCTTGAATGAGGCTGCAAAGAGTAAAGTCAAGTTTGCTGATCATAGCTCCATCAATGCAGAAGGAGTAGGGGACATCTCAAT TCAGAGAAAGGATGGCAAGTTGGCTCACATTCAAAATGTTCTCTATGTGCCAAAGATGAAGAGTAACCTGCTGAGTCTTGGTCAGTTGCTTGAGAAGGGA TACACTATGGTGTTGGCAGATAGAGAATTGAGATTGTTTGATGAAGACAAGACCTTGATCTTGAAAGTTCCTCTATCCACTAACAGAACCTTCAAGATTG GGTTGCAGATAAGTGCTCACAGAAACTTGTTGGCCAAGGTAGAGCATGATAGCTGGACTTGGCACAAGAGGTATGGTCACTTGAACTTTAGAGGACTTGA TTCTCTGAGTAGAGGCAAAATTGTCACTGGTTTGCCTTCAATAAAGATACCTAATGAGTTATGTGATGCTTGCCTTGCTAGTAAACAAACAAGGAACACA TTCTCTGAGTATATTCAATCCAAGACTTCCAAACCACTTGAATTGATATACTCAGATGTGTGTGGGCCTATGGAAGAGAACTCACTAGGCAACAACAGAT TCTTTGTGACATTTATTGATGATTTCACTAGGAAGACTTGGTTGTTTCTAATCAAGAAAAAGAGTGAAGTGTTCACTACTTTCCTAAGCTTCAAAAATCA GGTTGAAAGACAAAGTGATTTGAAACTGAAATCAGTCAGAACAGATGGTGGTGGGGAGTATATGTCAAGAGAATGGAAGGACTTCTGTGAAAGGGAAGGT GTGATTCATGAAGCTATAGCACCCTACACTCCA
• Tissue: pods
• Gene name: LI_gene_191881;
• Additional information: details;

Expression of Ll_transcript_486527

FPKM

• PAB: 0.1
• PNAB: 0.3
• PS1: 0
• PS2: 0.1
• PS3: 0
• PW1: 0.1
• PW2: 0.6
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_486527

• Blastp: -
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 27.17% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425092.1)
• Pfam: gag-polypeptide of LTR copia-type (PF14223.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;