Ll_transcript_486009

• Id Trinity: TRINITY_DN52352_c0_g1_i1
• Name Transcript: Ll_transcript_486009
• Sequence: GGATGAAGATTTGGATATATCTCATGTAGAAATTGACGAGGCATTGATGATTGATGATGATGATGATGATATATCTGATGATGAAGATGATGATCATGAA GATATGTTGAGGGATGTTTCTCTCCCCGTTTGCTTGCCTGACAAAGTCCATGATGTTAAATTGAGTGACTCTGCTGAGTGCACTGTTGCTCCTGCAACAA ATGATGGCCAGACTAATGCAGCCTCAGGTTCTACTAGCAAAGTTAGTACAGCCAGGGGGTCAGACACTGGTGAGTTTAGGAGAGGCTATTCTTTTAGCTC AAGGGGTGCATTGTCATTTGCTGCTGCTATGGCTGGACTTGGATCTGTTAATAGCAGAGGTATCAGGGGTGGCAGGGATAGGCATGGGCGTTCATTGTTT GGTGCTTCTAATGATCCCCCAAAGTTGATCTTCATTGCTGGCGGGAAGCAGCTTAATAGGCATTTGACTATATATCAGGCAATTCAGAGACAGCTTGTTG TAGATGAAGATGATGAGGAGAGGTTTGCTGGCAGTTCCTTTGTATCTAGTGATGGAACTAGGTTGTGGGGAGATACTTACACACTAACATATCAGAGGGC CGAGAACCACATGGACAGGGCTTCTACTGGAGGTTCAAGCTTAAATGTTTCAAAATCTGGAAAATCTGTGTCTGCATCAAATTCTAGCGCTGAAGCCAAG CTGCATCAATCTTCTGTTCTTGATAGCATCTTGCAGGGAGAATTGCCCTGTGAGCTGGAGAAGTCTAACCCTACATACAACATATTGGCACTACTGCGTG TGCTCGAGTCTTTGAACCAGTTAGCACCCCGTTTAAGGGTCCAAGTGGTTACTGATAACTTTGCTATGGGAAAATCTTCGGATTTAGATGAGCTAGGTGT CACCAGTGGTGATATGGTTCCACCAGAGGAATTCATCAGCAGCAAACTTACTCCAAAACTAGCTAGGCAAATGCAAGATGCCCTAGCATTATGCTGTGGG AGCCTTCCCCCATGGTGTTACCAATTAACTAAAGCATGCCCTTTTTTGTTCCCTTTTGAGACCCGGCGACAGTACTTCTATTCTACTGCCTTCGGATTGT CTCGTGCTCTACATCGACTGCAGCAGCAACAAAGTGCAGATGGTCATGGATCAACAAATGAAAGAGAGGTGAGGGTTGGGAGATTGCAGCGCCAGAAAGT CCGCGTTTCTCGAAATCGTATTTTGGATTCTGCTGCTAAAGTGATGGAGATGTATTCTAGCCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTT GGCACTGGCCTTGGTCCTACCCTTGAGTTTTATACACTTTTAAGTCACGACTTGCAAAAGGTTGGACTGCAAATATGGAGATCAGATTCTTCTGAGAACT TTCAAATGGAAATTGAAGGAAATGAAGAGAAAAGTAAAAGCATTGAAAGCTCTTTTGCTGGAGATGCAGAACTTGTTCAGTCTCGTTTTGGATTGTTTCC TCGGCCTTGGCCTGAAAATTCCGATGCAACTGCGGGTAGCCAGTTTTATAAAGTAATTGAACATTTCCGGTTGATAGGCCGTGTAGTTGCTAAAGCTCTT CAAGATGGACGCTTACTGGATTTGCCATTGTCGGTGTCATTTTATAAGCTCGTTCTTGGTCAAGAGCTTGATTTGCATGACATTCTTGTTATTGATGCTG GGCTTGGTAAAACTTTGCAAGAGTTGAACGCCCTTGTTTGCCGGAAAAATTATTTAGAATCTGGTGGTAGCTATACTGATAAAATTGCTAATTTACATTT TCGAGGAGCCCCAATTGAAGATCTGTGCTTGGATTTCACACTTCCTGGTTATCCAGAATACGTTTTGAAACCAGGAGATGAAATTGTTACCATTAATAAT TTGGAGGAGTACATATCCATGGTGGTTGATGCAACTGTCAAGACTGGAATCATGCGTCAAATAGAAGCATTTAGAGCAGGATTCAATCAGGTTTTTGACA TTTCAAGTCTACAAATTTTTACTCCCCAAGAACTGGACTATTTGCTTTGTGGTCGTAGAGAGATGTGGAAGGCGGAGACACTAGTCGACCATATAAAGTT TGATCATGGGTACACAGCCAAGAGCCCTGCTATAGTTAACTTACTTGAAATAATGGGAGAGTTCACACCTGAGCAGCAGCGTTCCTTCTGTCAATTTGTT ACTGGTGCACCTAGGTTGCCACCTGGTGGACTGGCTGTTCTAAATCCAAAACTAACGATTGTGAGGAAGCTTTCATCAACGGCAGCTAATGTTTCGTCCA ATGGGAATGGACCTTCTGAATCAGCCGACGATGACTTGCCGAGTGTGATGACATGTGCTAATTACCTAAAGCTTCCTCCTTACTCTACCAAGGAAATTAT GTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGAGTTTCTGGAACTAACCAATCTGACCCTGTGTGTTAATATGAT GAATCAGGAGTCTACTCTCAAGGCTCAATTATTTTTTGGTTGCATGTACTTTCCTCCTTGCTCTCAAATAATCGCGGGCGCATGTCCAAGGTTGTGGCAT AGTTCAGGTGAGCTTGCCATTTCAGTGAGATGGGATCTCGTTATTTTATTCTATGTGCTGCAGCACTTGCACAATTTTTGTTGATGATTTTACCCATGTG ACATGTTCTTCATTTTCTGATAAGCTCTTACGGATTCTTCCATAAATGACAGTTGAATCGGATTGCCACATTTTCAAGGTGTAAAGGAATTTGCAGAGCT TGTTCTAGCAACTAGAATGTGTAAATAAAATAGGAATGTTGAGTTTTTTCGTCCTTAATTTTTATACTCTGTTTTCAAGTTAAGATGGCAGCCAGCTATT ATACATGTATGGAAAATGTTAAAAGGGAATAGAAATAATATGAAATACTATGATATTTATGATATCATTATATTCCAGTTAGATCCTTTCAACTTCATCT
• Tissue: pods
• Gene name: LI_gene_192037;
• Additional information: details;

Expression of Ll_transcript_486009

FPKM

• PAB: 4.2
• PNAB: 5.8
• PS1: 8.9
• PS2: 5.1
• PS3: 7.7
• PW1: 5.3
• PW2: 5.3
• PW3: 4.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_486009

• Blastp: E3 ubiquitin-protein ligase UPL3 from Arabidopsis with 72.51% of identity
• Blastx: E3 ubiquitin-protein ligase UPL3 from Arabidopsis with 68.63% of identity
• Eggnog: ubiquitin protein ligase(COG5021)
• Kegg: Link to kegg annotations (AT4G38600)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019413064.1)
• Pfam: HECT-domain (ubiquitin-transferase) (PF00632.24)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;