| Id Trinity | TRINITY_DN52352_c0_g1_i13 |
|---|---|
| Name Transcript | Ll_transcript_486024 |
| Sequence | GGATGAAGATTTGGATATATCTCATGTAGAAATTGACGAGGCATTGATGATTGATGATGATGATGATGATATATCTGATGATGAAGATGATGATCATGAA GATATGTTGAGGGATGTTTCTCTCCCCGTTTGCTTGCCTGACAAAGTCCATGATGTTAAATTGAGTGACTCTGCTGAGTGCACTGTTGCTCCTGCAACAA ATGATGGCCAGACTAATGCAGCCTCAGGTTCTACTAGCAAAGTTAGTACAGCCAGGGGGTCAGACACTGGTGAGTTTAGGAGAGGCTATTCTTTTAGCTC AAGGGGTGCATTGTCATTTGCTGCTGCTATGGCTGGACTTGGATCTGTTAATAGCAGAGGTATCAGGGGTGGCAGGGATAGGCATGGGCGTTCATTGTTT GGTGCTTCTAATGATCCCCCAAAGTTGATCTTCATTGCTGGCGGGAAGCAGCTTAATAGGCATTTGACTATATATCAGGCAATTCAGAGACAGCTTGTTG TAGATGAAGATGATGAGGAGAGGTTTGCTGGCAGTTCCTTTGTATCTAGTGATGGAACTAGGTTGTGGGGAGATACTTACACACTAACATATCAGAGGGC CGAGAACCACATGGACAGGGCTTCTACTGGAGGTTCAAGCTTAAATGTTTCAAAATCTGGAAAATCTGTGTCTGCATCAAATTCTAGCGCTGAAGCCAAG CTGCATCAATCTTCTGTTCTTGATAGCATCTTGCAGGGAGAATTGCCCTGTGAGCTGGAGAAGTCTAACCCTACATACAACATATTGGCACTACTGCGTG TGCTCGAGTCTTTGAACCAGTTAGCACCCCGTTTAAGGGTCCAAGTGGTTACTGATAACTTTGCTATGGGAAAATCTTCGGATTTAGATGAGCTAGGTGT CACCAGTGGTGATATGGTTCCACCAGAGGAATTCATCAGCAGCAAACTTACTCCAAAACTAGCTAGGCAAATGCAAGATGCCCTAGCATTATGCTGTGGG AGCCTTCCCCCATGGTGTTACCAATTAACTAAAGCATGCCCTTTTTTGTTCCCTTTTGAGACCCGGCGACAGTACTTCTATTCTACTGCCTTCGGATTGT CTCGTGCTCTACATCGACTGCAGCAGCAACAAAGTGCAGATGGTCATGGATCAACAAATGAAAGAGAGGTGAGGGTTGGGAGATTGCAGCGCCAGAAAGT CCGCGTTTCTCGAAATCGTATTTTGGATTCTGCTGCTAAAGTGATGGAGATGTATTCTAGCCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTT GGCACTGGCCTTGGTCCTACCCTTGAGTTTTATACACTTTTAAGTCACGACTTGCAAAAGGTTGGACTGCAAATATGGAGATCAGATTCTTCTGAGAACT TTCAAATGGAAATTGAAGGAAATGAAGAGAAAAGTAAAAGCATTGAAAGCTCTTTTGCTGGAGATGCAGAACTTGTTCAGTCTCGTTTTGGATTGTTTCC TCGGCCTTGGCCTGAAAATTCCGATGCAACTGCGGGTAGCCAGTTTTATAAAGTAATTGAACATTTCCGGTTGATAGGCCGTGTAGTTGCTAAAGCTCTT CAAGATGGACGCTTACTGGATTTGCCATTGTCGGTGTCATTTTATAAGCTCGTTCTTGGTCAAGAGCTTGATTTGCATGACATTCTTGTTATTGATGCTG GGCTTGGTAAAACTTTGCAAGAGTTGAACGCCCTTGTTTGCCGGAAAAATTATTTAGAATCTGGTGGTAGCTATACTGATAAAATTGCTAATTTACATTT TCGAGGAGCCCCAATTGAAGATCTGTGCTTGGATTTCACACTTCCTGGTTATCCAGAATACGTTTTGAAACCAGGAGATGAAATTGTTACCATTAATAAT TTGGAGGAGTACATATCCATGGTGGTTGATGCAACTGTCAAGACTGGAATCATGCGTCAAATAGAAGCATTTAGAGCAGGATTCAATCAGGTTTTTGACA TTTCAAGTCTACAAATTTTTACTCCCCAAGAACTGGACTATTTGCTTTGTGGTCGTAGAGAGATGTGGAAGGCGGAGACACTAGTCGACCATATAAAGTT TGATCATGGGTACACAGCCAAGAGCCCTGCTATAGTTAACTTACTTGAAATAATGGGAGAGTTCACACCTGAGCAGCAGCGTTCCTTCTGTCAATTTGTT ACTGGTGCACCTAGGTTGCCACCTGGTGGACTGGCTGTTCTAAATCCAAAACTAACGATCGTGAGGAAGCTTTCATCAGCCGCAGCTAATGTTTCATCTA ACGGGAATGGACCTTCCGAATCAGCTGATAATGACTTGCCAAGTGTGATGACATGTGCTAATTACCTAAAGCTTCCTCCTTACTCTACCAAGGAAATTAT GTACAAGAAGCTACTATATGCAATCAATGAAGGCCAGGGGTCCTTTGATTTATCATGACTTTCTGGAACCAAACAACCTGACCCTATATGTTAATATGAT GAATCAGGGGTCTATTCTGGAGTCTCAGTTATTTTTTTTGGTTTCATGTGCTTCCCCCCCTTCATTTTCAAATGGTCAAAGGTTGTGGCATAATTCAGGT GAGTTGGATCGCCACAATTTGAAGGTGTAAAGGAATTTGCAGATCTCGTTCAAGCGAAATTATAGTTTGTAAATAAAATAGGAATATTTAGTTTTTCCGT CCCTAATTTTTATACTTTGCAAGTTGAGTTATGACAGCTATTATACATGTA BLAST |
| Tissue | pods |
| Gene name | LI_gene_192037; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_486024
| Blastp | E3 ubiquitin-protein ligase UPL3 from Arabidopsis with 72.36% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase UPL3 from Arabidopsis with 68.76% of identity |
| Eggnog | ubiquitin protein ligase(COG5021) |
| Kegg | Link to kegg annotations (AT4G38600) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413064.1) |
| Pfam | HECT-domain (ubiquitin-transferase) (PF00632.24) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |