Ll_transcript_486026

• Id Trinity: TRINITY_DN52352_c0_g1_i15
• Name Transcript: Ll_transcript_486026
• Sequence: AAGAGGCAAAAGGGCCTCAAACCAGGAATGCTGCACGTAGAAAAGCAGCTCTTGACAAAGAGGCGCAAATGAAGCCTGTAAATGGCGACTCTACTTCTGA GGATGAAGATTTGGATATATCTCATGTAGAAATTGACGAGGCATTGATGATTGATGATGATGATGATATTTCTGATGATGATGATGATGATGACCATGAA GATATTTTGAGTGATGTTTCTCTCCCTGTTTGCTTGCCTGACAAAGTACATGATGTGAAATTGGATGACTCTGCTGAGGACAGCATAGTTGCTCCTGTAA CAAGTGATGGCCAGACTGATGCAGCTTCGGGTTCTAGTACCAAAGTTGGTACAGCCAAGCGATCAGACACTGCTGTGTTTAGGGGTGGCTATTCTTCTAG CTCAAGGGGTGCATTGTCATTCGCTGCTGCTGCCATGGCTGGACTCGGGTCTGTTAATACCAGAGGTATCAGGGGTGGCAGAGATAGGCATGGGCGTCCG TTGTTTGGCGGATCTAATGATCCTCCGAAGTTGATCTTCAATGCTGGCGGAAAGCAGCTTAATAGGCATTTGACTATATATCAGGCAATCCAGAGACAAC TTGTGGTAGATGAAGATGAGGAAGAGAGGTTTGCTGACAATGACTTTGTATCTAATGAAGGAAGCAGGTTGTGGGGAGATATTTACACTATAACTTATCA GAGGGCTGAGAATCAAACAGACAGGGCTTCTGCTGGCGGTTCAATTTTAAATGTCTCAAAAACTGGAAAATCTGGGTCTTCATCAAATTCTAGTTCTGAA GCCAAGCTGCATCAAATTTCTGTTCTTGATAGCATCTTGCAGGGGGAATTGCCCTGTGAACTGGAGAAATCAAATCCTACATATAACATATTGGCACTAT TGCGTGTGCTGGAGGGTTTGAACCAACTAGCACCTCGTTTAAGGGCCCAGGTGGTTATTGATAGCTTTGCTGTGGGAAAAACTTCGGATTTAGATGAGCT AGGCGTCACCAGCGGTGCCAGGGTTCCTCCAGAGGAATTCATCAGCAGCAAGCTTACTCCAAAGTTAGCTAGGCAAATGCAAGATGCCCTAGCATTATGC AGTGGGAGTCTTCCGTCGTGGTGTTACCAGTTAACTAAAGCCTGCCCTTTTTTGTTTCCTTTTGAGACCCGGCGACAGTACTTCTATTCTACTGCCTTTG GGTTATCTCGTGCACTGCATCGACTGCAGCAGCAACAAGGTGCAGATGGTAATGGATCAACAAATGAAAGAGAGGTGAGGGTCGGGAGATTGCAGCGGCA GAAGGTTCGTGTTTCTCGAAATCATATTTTGGATTCTGCTGCTAAAGTGATGGAGATGTATTCTAGCCACAAGGCTGTACTTGAAGTAGAATATTTTGGT GAAGTCGGCACTGGCCTTGGACCCACCCTTGAGTTTTATACACTTTTAAGTCATGACTTGCAAAAAGCTGGACTGCAAATGTGGAGATCAGATTCTTCAG AGAAATATCAAATGGAAATTGATGGAAATGAAAAGAAAAGTAAAAGCATCGATAGCTCTTTTGCTGGAGATGGAGAACTTGTCCAGTCTCGTCTTGGGTT GTTCCCTCGTCCATGGCCTGCAAGTTCCAATGCATCTGAGGGTACCCCTTTTTATAAAGTGATAGAGTATTTCCGGTTGGTAGGTCGTGTTGTTGCTAAA GCTCTTCAAGATGGACGCCTATTAGATTTGCCGTTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAGAGCTTGATTTGCATGACATTCTTGTTATTG ATGCTGAGCTTGGGAAAACTTTGCAAGAGTTGAACGCTATTGTATGTCGGAAAAGTTATTTAGAATCTGGTGGCAGTTACACCGACAAAATTGCTAATTT ACATTTTCGTGGGGCTCCAATTGAAGATCTTTGCTTGGATTTTACACTTCCTGGTTATCCAGAATACATTTTGAAACCTGGAAATGAAATTGTTGACATC AATAATTTGGAGGTGTATATATCCATGGTGGTTGATGCAACTGTCAGGACTGGAATCATGCGTCAAATCGAAGCATTTAGAGCAGGATTCAATCAGGTTT TTGACATTTCAACTCTACAAATTTTTACTCCCCTAGAACTGGACTACTTGATTTGCGGTCGTAGAGAGTTGTGGAAGGCTGATACACTAGGTGATCATAT AAAGTTTGACCATGGGTACACTGCCAAGAGCCCTGCTATAGTTAATTTACTTGAAATAATGGGAGAGTTCACACCAGAGCAGCAGCGTGCTTTCTGCCAA TTTGTTACTGGTGCACCTAGGTTGCCACCTGGTGGACTGGCTGTTCTAAATCCAAAACTAACAATCGTGAGAAAGCTTTCGTCGACAGCGGCAAATGTTT CATCTAATGGGAATGGACCTTCTGAATCAGCTGATGATGACTTGCCAAGTGTGATGACATGTGCTAATTACCTGAAGCTTCCTCCTTATTCTACAAAGGA AATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGAGTTTCTGGAACTAACCAACCTGACCCTGTATGTTAA TATGAGGAATCAGGGGTCTACTCTCCATGTTCAATTATTTGTACTGTCCTTCTTGCTTCTCAAATAATTGCCACATTTGGGCCTCCCTTGTTAAAGGTTG TGGCACAGTTCAGGTGAGATGGGATACAGTTATTGGCTCTTGTGTTATATGATTAGAGATTACTTGTATTCTCTGTGCTGCAGCACTTGCACAATTTGAT GATCTTATAAACTTATTTTTCATTTTCTTCAAATTTTTGATCAGTTAATGTGGGTTCTCTTCCATTTAATGGCAGTTGAATTGAATCGCCACATTTTCAA GGTGTAAAGGAATTTGCGGACCTCCTACAATTAGAATGTGTAAATAAAAATAGGAATATCGAGTTTTTTCCTCCATATTTTTTATATCCTGTTTGCAATT TATGACAGCTATTATACATGTATGGAATATGTTCAATGAATAGAAATAATTTGCAATACTATCATTTATTATATTCCTGTTAGATAAGTCAAGGTGTGGT AAAATTAATTTTGTTTAGTTTGATATTGCTGTTTAATTTGACATTTTTAATCAGATTGAACAATAATATCATATCTATCTAAACTTAATTAGTAGATCAT GTAATGAACTATCAAATACTCGGTTCAGATCAGATTGTATACTGATACGATCGTTTTGTTGTATGCAAAGATTTGAGACTTAAATATAC
• Tissue: pods
• Gene name: LI_gene_192037;
• Additional information: details;

Expression of Ll_transcript_486026

FPKM

• PAB: 5.3
• PNAB: 6.5
• PS1: 5.8
• PS2: 4.4
• PS3: 6.6
• PW1: 5.8
• PW2: 5.5
• PW3: 4.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_486026

• Blastp: E3 ubiquitin-protein ligase UPL3 from Arabidopsis with 69.37% of identity
• Blastx: E3 ubiquitin-protein ligase UPL3 from Arabidopsis with 69.25% of identity
• Eggnog: ubiquitin protein ligase(COG5021)
• Kegg: Link to kegg annotations (AT4G38600)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019450983.1)
• Pfam: HECT-domain (ubiquitin-transferase) (PF00632.24)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;