Ll_transcript_486013

• Id Trinity: TRINITY_DN52352_c0_g1_i4
• Name Transcript: Ll_transcript_486013
• Sequence: TGATACTCTTGTTAAGGAATATTTCAGATTCATTTTTGGCTGAGGTTACATTTTTCAGATTGAGGTATTATGACAGTTATTACATGGTAAATGTTGTTTC ATTACACTTTTGTTGAAAGTTGGTTGGGTATTCACTGGTACGGTATGCATGATGCAGTGAATATGACCTAAACTTAGGTACCAAGTACGTTTTGTCTTTG CTCTGAATTATTATTTTTTACTTGGTTGATGTTTCCTGAGACATTGTAACAGTTTCTGTGGCTACTTTCTGTTAAATGTTTTCTATCTAGTGACATTTCC ATTTTTTGTGTGCCAGGATGAAGATTTGGATATATCTCCTGTTGAGATTGATGAGGAATTGATGATTGATGAGGAATTGATGATTGATGATGATGATGAT GATATATCTGATGATGAAGATGATGATCATGAAGATATGTTGAGGGATGTTTCTCTCCCCGTTTGCTTGCCTGACAAAGTCCATGATGTTAAATTGAGTG ACTCTGCTGAGTGCACTGTTGCTCCTGCAACAAATGATGGCCAGACTAATGCAGCCTCAGGTTCTACTAGCAAAGTTAGTACAGCCAGGGGGTCAGACAC TGGTGAGTTTAGGAGAGGCTATTCTTTTAGCTCAAGGGGTGCATTGTCATTTGCTGCTGCTATGGCTGGACTTGGATCTGTTAATAGCAGAGGTATCAGG GGTGGCAGGGATAGGCATGGGCGTTCATTGTTTGGTGCTTCTAATGATCCCCCAAAGTTGATCTTCATTGCTGGCGGGAAGCAGCTTAATAGGCATTTGA CTATATATCAGGCAATTCAGAGACAGCTTGTTGTAGATGAAGATGATGAGGAGAGGTTTGCTGGCAGTTCCTTTGTATCTAGTGATGGAACTAGGTTGTG GGGAGATACTTACACACTAACATATCAGAGGGCCGAGAACCACATGGACAGGGCTTCTACTGGAGGTTCAAGCTTAAATGTTTCAAAATCTGGAAAATCT GTGTCTGCATCAAATTCTAGCGCTGAAGCCAAGCTGCATCAATCTTCTGTTCTTGATAGCATCTTGCAGGGAGAATTGCCCTGTGAGCTGGAGAAGTCTA ACCCTACATACAACATATTGGCACTACTGCGTGTGCTCGAGTCTTTGAACCAGTTAGCACCCCGTTTAAGGGTCCAAGTGGTTACTGATAACTTTGCTAT GGGAAAATCTTCGGATTTAGATGAGCTAGGTGTCACCAGTGGTGATATGGTTCCACCAGAGGAATTCATCAGCAGCAAACTTACTCCAAAACTAGCTAGG CAAATGCAAGATGCCCTAGCATTATGCTGTGGGAGCCTTCCCCCATGGTGTTACCAATTAACTAAAGCATGCCCTTTTTTGTTCCCTTTTGAGACCCGGC GACAGTACTTCTATTCTACTGCCTTCGGATTGTCTCGTGCTCTACATCGACTGCAGCAGCAACAAAGTGCAGATGGTCATGGATCAACAAATGAAAGAGA GGTGAGGGTCGGGAGATTGCAGCGGCAGAAGGTTCGTGTTTCTCGAAATCATATTTTGGATTCTGCTGCTAAAGTGATGGAGATGTATTCTAGCCACAAG GCTGTACTTGAAGTAGAATATTTTGGTGAAGTCGGCACTGGCCTTGGACCCACCCTTGAGTTTTATACACTTTTAAGTCATGACTTGCAAAAAGCTGGAC TGCAAATGTGGAGATCAGATTCTTCAGAGAAATATCAAATGGAAATTGATGGAAATGAAAAGAAAAGTAAAAGCATCGATAGCTCTTTTGCTGGAGATGG AGAACTTGTCCAGTCTCGTCTTGGGTTGTTCCCTCGTCCATGGCCTGCAAGTTCCAATGCATCTGAGGGTACCCCTTTTTATAAAGTGATAGAGTATTTC CGGTTGGTAGGTCGTGTTGTTGCTAAAGCTCTTCAAGATGGACGCCTATTAGATTTGCCGTTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAGAGC TTGATTTGCATGACATTCTTGTTATTGATGCTGAGCTTGGGAAAACTTTGCAAGAGTTGAACGCTATTGTATGTCGGAAAAGTTATTTAGAATCTGGTGG CAGTTACACCGACAAAATTGCTAATTTACATTTTCGTGGCGCCCCAATTGATGATCTGTTCTTGGATTTTACGCTTCCTGGTTATCCAGAATACATTTTG AAACCGGGAAGTGAAATGGTTAACATCAATAATTTGGAGGAGTACATATCTGTGGTGGTTGATGCAACTGTCAAGACTGGAATTATGCGTCAAGTAGAAG CATTTAAAGCAGGATTCAATCAGGTTTTTGACATTTCAACTCTACAAGTTTTTACTCCCCAAGAACTGGACTATTTGCTTTGTGGTCGTAGAGAGATGTG GAAGGCGGAGACACTAGTCGACCATATAAAGTTTGATCATGGGTACACAGCCAAGAGCCCTGCTATAGTTAACTTACTTGAAATAATGGGAGAGTTCACA CCTGAGCAGCAGCGTTCCTTCTGTCAATTTGTTACTGGTGCACCTAGGTTGCCACCTGGTGGACTGGCTGTTCTAAATCCAAAACTAACGATTGTGAGGA AGCTTTCATCAACGGCAGCTAATGTTTCGTCCAATGGGAATGGACCTTCTGAATCAGCCGACGATGACTTGCCGAGTGTGATGACATGTGCTAATTACCT AAAGCTTCCTCCTTACTCTACCAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGAGTTTCTGGA ACTAACCAATCTGACCCTGTGTGTTAATATGATGAATCAGGAGTCTACTCTCAAGGCTCAATTATTTTTTGGTTGCATGTACTTTCCTCCTTGCTCTCAA ATAATCGCGGGCGCATGTCCAAGGTTGTGGCATAGTTCAGTGCCACATAAGACTTGGATAGCAAGTGACTTCACACCAGGGCAACCATCCTCATTATTCC TTATGAAGATTGGTTTATCCAATGGAACTGAACATGTTTCTTTTCCCAAGCAATGCTGCTCAACAATCTGCTTTGTGTTAGGAGCATTACATTTTCCCAA ACTAAAGCTTCCACAGTAACCTACAGGATCACCATAGCTTGCAAAATCTACAGCCAAAATGGTTTTGTGGTTTGGACACTTGAGGAAAGCTTCTGGTCTC ACTTTATCCACAACAGGAATGCTCTTGGGATGTGATAGCTACATACAAGTAACATATTTTAATTTGTAACAAAAGAGAAAGAAAATAACAAAATAAGTGT AACAAGATGTTTGGAAAAGAGTGTGATTATATATATAATTTTTGACAATAATTTACTTACTCTGATTGAGTAGGTTCTCCAAGAGGAGAGAGGTAACTCA TCCAATGTCGACCAATGCTTAAACCATTGACCCAAATCATTCCTTTCCCCATACCATGCATTTTTATGGCAACAGGACCCCTTCCCTCTGGTGTTCCAAA TGTTGTCTGTAAAGTAAATGCACCAGAATCATAAGGGTCTCATATGTATAGTATTTATTTATTAGGTACCACTACATACTATATGTAATTCATTTAGTAT TAAATATATGTAAGGTTGTAAGATTAATGTAATGAGTAAATCAAT
• Tissue: pods
• Gene name: LI_gene_192037;
• Additional information: details;

Expression of Ll_transcript_486013

FPKM

• PAB: 5.5
• PNAB: 4
• PS1: 6
• PS2: 6
• PS3: 7.9
• PW1: 5
• PW2: 5.9
• PW3: 6.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_486013

• Blastp: E3 ubiquitin-protein ligase UPL3 from Arabidopsis with 69.95% of identity
• Blastx: E3 ubiquitin-protein ligase UPL3 from Arabidopsis with 68.25% of identity
• Eggnog: ubiquitin protein ligase(COG5021)
• Kegg: Link to kegg annotations (AT4G38600)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019413064.1)
• Pfam: HECT-domain (ubiquitin-transferase) (PF00632.24)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;