Ll_transcript_486018

• Id Trinity: TRINITY_DN52352_c0_g1_i9
• Name Transcript: Ll_transcript_486018
• Sequence: CAGGCAATGCTGAGTTTAGGAGTGGCTATTCTTCTACCTCAAGGGGTGCATTGTCATTTGCTGCTGCTGCTATGGCTGGACTTGGGTCTGTTAATAGCAG AGGTATCCGGGGTGGCAGAGATAGGCATGGACGTCCATTGTTTGGTGGTTCTAATGATCCTCCTAAGTTGATCTTCACTGCTGGCGGGAAGCAGCTTAAT AAGCATTTGACTATATATCAGGCAATTCAGAGACAGCTTGTGGTAGATGAAGATGATGAAGAGAGGTTTGCTAGCAGTGACTTTGTATCTAGTGATGGAA GCAGGTTGTGGGGAGATATTTATACTATAACTTATCAGAGGTCTGAGAATCAGACCAACAGAGCTTCTGCTGGAGGTTCAAGTTTAAATGTTTCAAAATC TGCAAAACCTGCGCCTGCATCAATTTCTGATTCTGAAGCCAAGCTGCATCAAACTTCTGTTCTTGATAGTATCTTGCAGGGAGAATTGCCCTGTGAACTG GAGAAATCTAATCCTACATACAACATATTGGCACTGTTGCGTGTACTGGAGGGTTTGAACCAGCTAGCACCTCGTTTAAGGGCCCAGGTGCTTACTGATA GCTTTGCTGTTGGAAATACTTTGGATTTAGATGAGCTAGGTGTCACCGGTGGTGCTCGGGTTCCTCCTGAGGAATTCATCAGCAGCAAGCTCACTCCAAA ATTAGCTAGGCAAATGCAAGATGCCCTAGCATTATGCAGTGGGAGTCTCCCCTCGTGGTGTTACCAGCTAACTAAAGCTTGCCCTTTTTTGTTTCCTTTT GAGACCCGAAGACAGTACTTCTATTCAACTGCCTTTGGGTTATCTCGTGCACTGCATCGACTGCAGCAGCAACAAGGTGCAGATGGTAATGGATCAACAA ATGAAAGAGAGGTGAGGGTTGGGAGATTACAGCGTCAGAAGGTTCGTGTTTCTCGAAATCATATTTTGGATTCTGCTACTAAAGTGATGGAGATGTATTC TAGCCAAAAGGCAGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGCCTTGGTCCCACCCTTGAGTTTTATACACTTTTAAGTCACGACTTGCAA AAAGTTGGACTACAAATGTGGAGATCAGATTCTTCAGAGAAATATCAAATGGAAATTGATGGAAATGAAAAGAAAAGTAAAAGCGTCGAAAGCTCCTTTG CTGGAGAAGGGAAACTTGTTCAGTCACGACTTGGGTTATTTCCCCGTCCTTGGCCTGCAAATTCCGATGTATCAGAGGGCAGCCGGTTTTATAAAGTTAT CGAGTATTTCCGGTTGGTAGGCCGTGTAGTTGCTAAAGCTCTTCAAGATGGACGTTTATTGGATTTGCCATTGTCAGTGGCATTTTATAAACTCGTTCTT GGTCAAGAGCTTGATTTGTATGACATTCTTGTTATTGACGCTGAGCTTGGGAAAACTTTGCAAGAGTTGAACGCCCTTGTTTGCCGGAAAAGTTATTTAG AATCTGGTGGCAGTTACACCGACAAAATTGCTAATTTACATTTTCGTGGCGCCCCAATTGATGATCTGTTCTTGGATTTTACGCTTCCTGGTTATCCAGA ATACAT
• Tissue: pods
• Gene name: LI_gene_192037;
• Additional information: details;

Expression of Ll_transcript_486018

FPKM

• PAB: 18
• PNAB: 15.8
• PS1: 22.2
• PS2: 20.5
• PS3: 26.6
• PW1: 18.4
• PW2: 21.2
• PW3: 22.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_486018

• Blastp: E3 ubiquitin-protein ligase UPL3 from Arabidopsis with 71.03% of identity
• Blastx: E3 ubiquitin-protein ligase UPL3 from Arabidopsis with 70.16% of identity
• Eggnog: ubiquitin protein ligase(COG5021)
• Kegg: Link to kegg annotations (AT4G38600)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019454237.1)
• Pfam: HECT-domain (ubiquitin-transferase) (PF00632.24)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;