Ll_transcript_486008

• Id Trinity: TRINITY_DN52358_c0_g2_i12
• Name Transcript: Ll_transcript_486008
• Sequence: GTTTTCTTTCTCTCTTATCTCCCACATTCCTCACTTTCTCCCTCAACGTTTCATTCTTCAGAGAAACACCAACGAAGATAGCCATAGCCACACTCCAAAT CCAAACATAGCAATCTTTCAATATAGCTAAGAGCTTTGGATTCTCTCATTACAAGAATCCATGGCTTCCGCACACTGTTGATTGATTGCTACATTCTTCG ATCTGAATCGCCGCTTCTGTATCTATCCTATGCTCATTTTGTCAAATCCGAAGGTTTTGTGGAATTTTGTGCGGTTTTGATTTTCTTGTCTGTGTGGCTG CCTCATGCAATTGGGTTGAAAATTTCATGCCGCCGGAACCAATACCTTGGGATCGGAAGGAATTCTTCAAGGAGAGGAAGCATGAGAGGTCCGAATCTCT AGGCTCCGCGGCGAGATGGCGAGACTCGTCTTATCATCATGGCTCCCGCGACTTCAATCGCTGGGGATCTGCCGATTTTCGCAGACCGGCAGGTCATGGT AAGCAGGGTGGTTGGCACCTGTTGCCTGAAGAATCTGGTCGTGGGTACTCATACTCTCGTTCTTGTGACAAGATGCTGGACGATGATAACTGTCGGCCGG TGGTTTCTCGAGATGGAAAATATCACAGGAGCATTAAGGAAAATAGGGGATCATTTGGCCAGAGAGATTGGAGAGAACGTTCTTGGGAAGCTTCCAATGG CTCTCAGAACTTCTCCACGAGGCAACTGGATGCAAATAATGACCAGAAGTCAGCTGTTGACATGCTGACATATTCCTCTCGTCCACATGCTGACTTTGTT AACACTTGGGAACAACATCACTTGGAAGACCAGCATGATAAAATGGGCGGTCTCAATGGGTTGGGTACAGGCCGGAGATGTGATAAGGAGAGTTCTCTGG GTTCAATTGACTGGAAGCCACTTAAATGGACGCGTTCTGGAAGCTTGTCTTCAAGAGGCTCAGGTTTTAGCCACTCGAGTAGCACAAGGAGCTTCAGAGT GACAAATTCCTATGAAGGAAAGGCTGAGCTGCCTCATAAAAATGCATCTGCTATTGAGTCACATTCAGGGGAAGCTGCTGCTTGTGTGACATCTTCTGTT CCATCTGAAGAAACAGATTTGAGGAAGAAGCCTAGGCTAAAGTGGGGTGAGGGACTTGCAAAGTTCGAGAAGAAGAAAGTTGAGGGTCCTGATGAAAGTT CAAGTAAAAATGACCCTATCTTGTCTATTAGTAATCTTGAACCTTGTAATGCTCTTTGTCCCAGTGTAGTAGATAAAAGCCCAAAAGTTATAGGATTTTC AGGTTGTGCATCTCCTGCCACTCTATCTTCTGTTGCCTGCAGTTCCTCACCAGGCGTGAACGATAAATTATTTGTAAAAGCTGCAAATGTGGACAATGAT GTTAGTAATTTAGAGAAGTTGGATACTGACTCATTGACTAGTTTGGGTTCTTCACTTAATGAGTTGCTACGTTTTGATGATTTGAGTTCTGTGGATTCTA GTCTAGTAAGGTCCACATCCACTGCAATGAATAAGTTGCTGATATGGAAAGCTGACGTTTCAAAGGTATTGGAGGTGACTGAAACTGAAATTGATTCTCT TGAAAATGAATTGAAGTCACTGAAATCTAAATCTGAGGGTAGATTTCCATGTCCTGCTGCAGCTGGCTCCTTGCTGGTATGCTACAATGCAAAACCTTGT GAGGGACATGTTGGAGGCACTAACAGGGTTGCTCGTCCAAAGCCAGTGCAAATTGTTTCTTCTGTTGACCCTAATATGGAGAAGATGCTGTTTTCAACTA ATTTGCATACTATACATGATAATGGCAAGGAAGAGGATATTGGTAGTCCTGGAACAGCAACGTCGAAATTTATAGAGCCTCCGTCTTTGATAAATGCAGT TTCCTTGTGTGATGTGGGTAGGAATGATACTTGTGCTGCAGATTTGGATGTTGTTCAGTCTACGGACATGCAATGCTTAGTTCCCTGCAGTCAAAGGCAA GTTGCTAGTGTATCTGCTCATGGCGATGATAGTACTATGGAGGGTGGCATGGATGCTAATACTGGTGCAAGCTTATCTTCTATAACTGGAGAAATTTTAT ATAACACAATTCTTTCTTCCAATAAAGAATGTGCAAACAGAGCATATGAAGTATTTGCTAAATTGTTACCGAAACAATGTGCCAAAATTGGTAATGTTGA AGCTAGCAGTGGTTCACATGACAGTTCATTCATGGAAAGATTTGCTGCAAAAAAGCAGTATGCAAGATTTAAGGAGAGAGTTATAACACTGAAGTTTAAA GCCTTGCATCACCTGTGGAAAGAAGATATGTGCATACTGTCTATAAAGAAGTACCGCCCTAAATCTCACAAGAAAGTTGAATTAGGTGTGCGAACTGTCA ATAGTGGTCAAAAGAACCGATCCTCTATTCGTTCTCGTTTTCCCCTGCCTGGAAATCTTCTAAGCTTGGTTCCAAAATCTGAGATTGTTAATTTTGCAAG CAAAGTGCTTTCAGAATCCAAAGTCAAAGTTCATAGAAACAGCTTGAAGATGCCGGCATTAATTTTGGATCAGAAGGAGAAAATGGTTTCGAAGTTTATA TCTACAAATGGGTTGGTTGAAGATCCATTGGCTATTGAGAAAGAAAGGGCTATGATCAACCCTTGGACATCAGAAGAGACAGATATTTTCCAGGAGAAAT TTGCAAACTTTGGAAAAGACTTCCGGAAAATTGCTACTTTCCTTGACCACAAGACAACTGCTGACTGTGTTGAGTTCTACTACAAAAATCACAAGTCAGA TTGTTTTGAGAAAATTAAGAAGCAAGATGGCAGAAAGGTAGGAAACTCGTTTTCTGCCAATGCCAACATTATGGCATCAGATAGAAGATGGAGTTGTGAA GTGAATTCTGCTTCACTTGATATTTTGAGTGCAGCTTCAGTGATGGCAGATAGCATTGCAAGTAACCAGAAAATGCGTTCAGGAAGTCTCCTCTTGAGGG GATTAGGTAGGATGAAATCATCAAAGGGCAAGGACAGTAACACTGAAAAATCAAATGGTTTTGATATTCTTAATGATGAAAGAGTGACTGTTGCAGCTGA TGTATTGGCTGGTATTTGTGGTTCTCTTTCTTGTGAGGCTATTAGTTGTACAACAAGCTCGGTTGATCCGGTGGAGGGTAACAGGATGTGCCAGAAGTTG AGCTCTGTATGCCAACAACCCGAGATACCTGATGTCACTCAGGATATTGATGAGGGAACTTTTTCAGATGAGAGCTCTGAGGAAACGAATCCTACTGATT GGACTGATCAGGAGAAGGTAGTGTTTCTTCAGGCTGTGTCATCTTTTGGTAAGGATTTTGCAATGATTGCACAGTGTGTGGGTACAAGGTCACAAGATCA GTGCAAAGTATTCTTCAGCAAGGCTCGAAAGTGCCTTGGGTTGGATCTTGTGCACCGCAGACCTGAAAATTCTGTATCTCCACTGAATGATCATGCAAGT GGTGGTGGGAGTGACACAGATGACGCATGTGTTGTAGAGACAGGTTCAGACATTGGGTCTGGTAAGTTGGGCACTAAAACAGATGAGGAATTGACTTCAT TTGTCATGAACACATACCGGGAGGTTTCCTACCATGTGGAAGCCAGGAACTTGTCAACTGACTTAAATGAATCAAAAAAAATTAATGGGGCAGAAGTACA TCATGACCATGTAAATATGATTTCTGATGCATTTGTAATTACGGGCAAGACTAAACTGAACAATGATTGTAATGACGTTATCTTAAACAGTTCTGATGCA TCTGGTTCAATCCTGGGCCAGAAAGCTATAATTATGTCAGATAACACAGGAGTTGGAAAATATAAAAATGAAGTGGAAAGTGTAGTTTCTGAATTGGCTT CTGCTACAGAGATAATTGAACCATGCCACTCAAATTTGGTTCCCGAAGTTTCTTCTGGAGGTCATGAAAATGGACTGGAGAGGCAAAGAGTGTCATCATC TCAATGCCTGGTTGATAGACATGATAACCATGAAGCTGATACAGATGCTTTAGCCTTTTCAAGATTGAGTTTTGATGTTGAATGCCGTCCCAAATTGTCT CTTGAAAAGCCTCATATCTCAGGATTGTCTGTGGAGAGTCCTCGTGCAGCTACAAATTCATTGTTGCAAAATGCTGCTACTGCTGCTCTATGTGAGAAAA CAGCTACCCAAGATCAACTGTCTTCTACTTGTGATTTTCAGGGAAGTGGAGATATGTGCTGCCATAATTCCATCAACATTGGTGACCATCAGCTTCGTAA TCCTGGAGGGTTATTAGACCGTGTTGAGGATGCTAGCATCTTCCAAGGTTATCCTTTGCAAGTGCCTGTTAAGAAAGAAGTGAATGTGGATACAAGCTGC AGCGGTTCCTCAACGGAGTTGCCACTTCTGACTCAAAAGATTAAATCAGCTGATGATCATTATAAAGCCAAATTGCAGTGTTTGTCAGATTCAGATAAAA CATCCAGAAATGGTGATGTGAAACTGTTCGGGAAGATACTAACCACTCCTTCATCCACCCAGAAACCTAATATAACTACCAAGAGAAGTGAAGAAAATGG TACCCATCATCCCATGTTAAGCAGCAAGTCTTCTAATCTGAAATTTGCTGACGGAAATTCCACAATTTTGAAGTTCGATCATGATGATCATACTGGGGGG CTTGAAAATGTACCAGTAATGAGTTATGGTTATTGGGATGGGAACAGAATACAGACTGGTTTCTCAGCATTGCCTGATTCTGCCATCTTGCTTACAAAAT ATCCTGCTGCATTTACTAATTATCCTGCATCTTCTGCAAAATCAGAGCAACAATCATTGAAGGCATTGGCCAAGAATAATGAACACCTGAATGGTGCATC TGCTTTTTCAACTATAGAAGTCAATGGCAACAATGGTGTGATTGATTACCAGATGTATGAAAATAGGGATGGTCCAATAGTTCAGCCATTTATGGTAGAT GTAAAGCTCCACCAAGATGTGTTCTCAGAGATGCAGAAAAGAAATGGTTTTGAAGATACCTCAAATTTACAGCAACAGGGAAGAGGAATGGTGGGAATAA ATGGTGTTGGCAAACTGGGGACTCTTGTCGGCGATGGAGTCTCGGATCCGGTTGCAGCAATCAAAATGCATTACTCCGATTCTGGTGGTCAGACTGGGAG TATCACCAGAGAGGATGAACCTTGGGGAGGGAAAGGGGAGGCAGGTAGTAGTAGGTGCTCTGTATAATGATGTTTTCTGTAATTGCTCAATACGTTAATA GGGTGATTTGTTTATTAGGTGCTTGTAATATGCAGCAGCTCTGTATTTGTTGTATTGATTGAAATACAGAAATAATCTCTGAAAAAGTTAGCTAAGTCAT TGCCACTTTAGATCCCTTTTTGCCATCACTGTTCTTTTCAACCATCATCGATCTTTTCGGATGATTACTTGAAATACAATTCTTGATGGCGGTACTAATT TTCTAAACAGGAAATTAGACATTTGGTTTTCCTTCTTTGCTCTGGTTTTGATAGGGAACAAATTGTAACCTATAGAACTATTCTACTCTTGAGGAAGATA TAAACTAAAAGG
• Tissue: pods
• Gene name: LI_gene_192065;
• Additional information: details;

Expression of Ll_transcript_486008

FPKM

• PAB: 2.7
• PNAB: 8.8
• PS1: 7.5
• PS2: 5.6
• PS3: 8.6
• PW1: 6.9
• PW2: 8.5
• PW3: 7.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_486008

• Blastp: Nuclear receptor corepressor 1 from Silurana with 37.61% of identity
• Blastx: Nuclear receptor corepressor 1 from Silurana with 37.61% of identity
• Eggnog: nuclear receptor co-repressor(ENOG410YDXP)
• Kegg: Link to kegg annotations (613105)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019413245.1)
• Pfam: Myb-like DNA-binding domain (PF00249.30)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;