Ll_transcript_487316

Id TrinityTRINITY_DN52366_c1_g1_i1
Name TranscriptLl_transcript_487316
SequenceCTTTCTTCATTTTATGATCAAAACAAAAACAACAACAATGGATAGTAGTGGAGTAGCAGCAACAGGAGGAGGAGGAGGCGGCGGAGGCGGCGGCGGCGGA GGCTTTCATGGCTACCGCAAGCTCCCCAACAACACTACCATTTCTGGGTTGAAGCTATCAGTGGGAGGTGGTGAGAACATTAACAACCAATCAGCAGCAG CAGCAGCAACAGAAGATAATGAATGCATGGTGAGGGAGCAAGATCGTTTCATGCCAATTGCAAATGTGATAAGGATAATGAGGAAGATACTGCCACCACA TGCAAAAATATCAGACGATGCAAAAGAAACAATACAAGAGTGTGTGTCTGAGTATATAAGCTTCATAACTGGTGAAGCCAATGAGCGTTGCCAAAGGGAA CAACGCAAAACTATCACCGCAGAAGATGTGCTTTGGGCTATGAGCAAGCTTGGCTTTGATGACTACATTGAACCTCTCACAATCTACCTTCACAGGTACC GTGAGTTGGAGGGTGACAGAAGCTCAATGAGGGGTGAAGCACTCGGGAAGAGGAGTAGTTCTAGTGGTAGTGGTAGTGTGGAATATGGGACACTTGGTGT TGCTACTGCTTTTGTGCCACAGTTTCATCATCATCACCATCATCATCACTCAAATGGGTATTATGATCATGCTGCTGCTGCTGTTATGGGGAATTACATG AGGGATGCTGCATCAAACAATCATAGTAATAATACCAACAATGCTGCATCTAAGGCTGCAACCATCACGAATGCTGATCAACCAATATGAATCACTATTT AATTACTACTCATCAAATCATACTCTTAACTCTCTAATCGCAATAACATTCCTTAATGTGGACCCTATCATCTTATGTGCCCATTCATTAAGCACTTTTA ATTTTAATGCTCCTGTCTTTTTACTTAATATATACTTAATTATTTGGCTCAACCACGTTAGAGAAGCAGTAAAAACAACTCATAGTCTAATACTAATACT AATATATATCGTTAATGAATGAAAGTTAGAGAAGCAAATAGTTATACTTATTCGCTTAAAAACAAGTAACTTATTTCTAAATTTGTCTATGCATCCTTAT ATATTTAATTATTTGTATGACATGGACATGGCATTATCAACTATATATCTCTTTAATTAATACACCATTACTTCCACACTCATTTTTTTGGGATGTGTGA CAATTATTTCCTTATTACATGGAGCTTACAACACCGGATTTATTTAAACTCAATCACTCACTCACTTAAGAATGACACTCTTATTTTCTTTATTTCAATC CCCGCCCTCTGCTTATTCATAACGTTTTAAACTAATTCCCAATAATAATCACTAAAATCTATTATAAACTAATACAATAGATTATGTGTACTTTAAAGTC ATAAATTTTTTAAATATATATTAAAAATACAATTGGGAATATGTAAGGATTTGGGGGAAGACTATGTATATGTATCATAGAGATTCGTTAATCATATTCT ATCAAGTAATATTTTTTCACTTAAACATCACCTTTTAGTTAAATTGATACACACATATAATAATAAAAGCGTGAGAGATTACCTCCGTTGATGCCCTTAT ATACTATAAATTGTTGAGTTATTTTTGTAATAATACATATATATTTTTACATACAATTTTGTAGTTATTATTAATATGTAAGTTAAGATATAAAATGATA TATTATTAATGGCATATAGGTGGAGCTGAGTCATGTTTATAAGGTGATAAAATGGAAGCATAGCATATTTGGGTATTGGGAATAATATTGTTGGATAAGG ATCGCAATCATAATAATAGTTATACTATTCATATTTCCAACATCAACACCAACACCAACGTTGTTCGGTTGATTCCATGTCTTCTTCTTCTTCTTCCACT TCTGCTTCTATTAAACCCCCACTTCCAGATGTCTGTATTGTTGGTGTTGCACGCACTCCAATTGGTGCTTTGCTTGGCACTCTATCATCTCTTTCAGCTA CACAATTAGGCTCAATTGCTATAACATCTGCTCTTAAGAGAGCCAATGTTGATCCTTCAGCTGTGGAAGAGTTGTTTTTTGGGAATGTTCTCAGTGCAAA TTTAGGACAAGCTCCTGCCAGACAAGCTGCATTAGGAGCTGGTATACCCACTTCTGTAATCTGCACTACTGTCAACAAGGTCTGTGCAGCTGGGATGAAA GCTACCATGCTTGCAGCACAGACCATACAACTCGGTATCAATCATATTGTTGTCGCCGGTGGTATGGAGAGCATGTCAAATGCACCCAAGTACATTGCAC AAGCAAGGAAGGGATCTCGGTTAGGACATGATACTCTCATTGATGGTATGCTCAAAGATGGCCTTTGGGATGTCTATAATGACTTTGGCATGGGTATTTG TGCAGAACTATGTGCAGATCAACATGCCATAACAAGATCTGAGCAGGTACTGTTCCTTGCTCAATCACCTTATCAATTTCTGTTATGGATTTCATGTTCT CTAGTTAAAGTACTTCATGCCTTAATTACTTTCATTACTTTCGCTGACTCCTCTAGCTGCCTCAGTTACTTTGAATGAAAATCAGTATCCACAGGGGTAG CTAGCATCCCCTCCTCTGTTTAAATTTTTATTCTGTTACCCCTCCCCACATGATTTTGGCCCCCTTGCTAGAACTCGCAGAACAATAAGAACGAGACCAG GTGCTACAGTAGGAAGGCTCCTGCCATATGCACAATTCAAGGAAGACTTGGATCCACTATGTGAATCTATAGTAGTAAGCCTTACCTTGCATTTGCAAAA AGGTTGATTTCAAGACTTGAATGCATGACCACCAAGTCACATGATGACAATTCCAACTATTGTGTCAAGACTGCCCTCAGCAAAGTAGTATTTCTTTACT AAATATTTTCTAATCTCGATTAACAGCCTCTTCGCTTGCGAGGATAATATTATGTACATCTACCGTCCTAATACCTCACTAAGTGAGAATCTCATGCACT GAGCCACCCTTTTGATTTGACAACTGTGTCTACTTGTGTCACATGACATTGACATTACTCCTCCCTCTCGAATACTTTTATAAACAACTTTAGTTGAATC CAGGATTCATAACTTTGTTCTATTTTTCTATGTATACGTTTCTCAGGACTCTTATGCCATTCAAAGCTTTGAAAGAGGAATATCAGCACAAAATGCTGGT CATTTTTCTTGGGAGATAGTTCCGGTTGAAATTTCCAATGGAAAAGGGAAGCCTCACACACTTGTTGATAGAGATGAAGGTCTGGGGAAGGTAAATGCAT AAATGTACACATATTAACTAATAATCAAAATGGATTATCTAGTCTGCAGTACATACTAATAAATTTTACTTTTGCATTGTTATTATCACATGTCTGTTAA TCGTGTACTGACCAGTGTTGGTAGAAAATAAAATGTTTTGGGTGGTTCTATCTCATTATTTTTAGCTCTTGCTGAGTCTTGCCTCACTATTATAACTGAA CTGTAGAAGCCTTCAACTCAATTCTTATATTAAATTTACTTGCTCCATGGTCTTCGTCACATGCTTGGTATTGGAATATGGTGGAAACTCATGTGGTTAA GTGGTTTGCTTAATATTGATATTCATGTTGCTAGTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAACTTTAAGGAGGATGGGGGTACTGTGACTGCC GGCAATGCTTCTAGCATAAGTGATGGTGCTGCTGCATTAGTACTAGTGAGTGAACAGAAGGCACGCGAGCTTGGATTGCGAGTAATAGCAAAGATAAAAG GATATGCGGATGCGGCTCAGGCACCTGAATTATTTCCAACTGCTCCTACCCTTGCAATTCCAAAAGCTATATCGAATGCTGGTTTAGAAGCTTCTCAAAT TGATTACTACGAAATAAATGAAGCATTTTCTGTAAGGAAAACATCATGGATTTTACTGTCAGGCTTATATGTTAGTCTTGTTTTCTTACATCATCTATGC AGGTTGTGGCTCTTGCAAATCAGAAGCTTCTTGGTCTTAATCCGGAAAAGGTTAATGTGCATGGTGGAGCTGTATCATTGGGTCATCCACTGGGTTGCAG CGGAGCTCGTATCTTGGTTACATTATTAGGGGTAACTTGTGACCTTGGTTACTCTAGTTTTTTTCCCTCTTCCACTGATGTATATAAATTATTCTGTTTT ATTCTCCGGATTTTTGGTGATCTTGGTTGTGTTGTGTTTCAGGTATTGAGAGAGAAGAATGGAAGGTATGGTGTTGCTGCAATTTGCAATGGGAGAGGAG GGGCATCTGCTATTGTCTGTGAGCTCATGTAAGCCCTCTTCTATCACTTTTGTTTAGAACTCATTCAAAATAAAGAGAAGAATATGTTTCATTTTTATCA GAAGCTTCTTTCATCACTTTCTAATAAGGTTGTTGCATTTTGTAGGCCATTTGCAAGTTTGAGACGTACTTCATTATGATTTGGTGTCCTCACAGCTTAC TGCATTCCAATTATATATACATCATTTTCTGAAAGTATAAAACATGTAATAAATTTGATTCAGGAAATAAGTCACATTACTTCATAACATATGAAATATA AGAAATATATGAATTATATTTTGAAGGCTATCAAGATGGGTAGCGAGAGAGTGAGGTTGGAATAGGACCTATGTAATTTGAGGCATATGTTTCACTTTGG TCAAGTGCATGCCAATGTATTTGGTCTCTATTTTATGGTTCTAGAAATCTGAAGTATTATTAGCTTCAAAACATGTTCTTAAGCCTACAAGTTTTATGCA TACTTGTCCAACAACTTCAGAAGTATGTACTTGACAAATTCTAGTATTTGGAATCGATCTATACATTCACATATCACTTGGAGTTTACTCCTAACTTGCA CAGTAGAGAAAGTTCAATCATCTTATAATGTTCTACTTGCACTTTTTAGGTAAATTTTCTAC BLAST
Tissuepods
Gene nameLI_gene_192139; 
Additional informationdetails; 

Expression of Ll_transcript_487316

Labels

PAB abscising pods
PNAB non-abscising pods
PS1 seeds stages 1-3
PS2 seeds stages 4-6
PS3 seeds stages 7-8
PW1 pods wall stages 1-3
PW2 pods wall stages 4-6
PW3 pods wall stages 7-8

Annotations of Ll_transcript_487316
BlastpNuclear transcription factor Y subunit B-6 from Arabidopsis with 62.44% of identity
BlastxProbable acetyl-CoA acetyltransferase, cytosolic 2 from Arabidopsis with 77.78% of identity
EggnogCore component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling(COG2036)
KeggLink to kegg annotations (AT5G47670)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019434947.1)
PfamCore histone H2A/H2B/H3/H4 (PF00125.23)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;
Links to GO: General; Genes and gene products; Annotations; Ontology;