Ll_transcript_487342

Id TrinityTRINITY_DN52366_c1_g1_i15
Name TranscriptLl_transcript_487342
SequenceCTTTCTTCATTTTATGATCAAAACAAAAACAACAACAATGGATAGTAGTGGAGTAGCAGCAACAGGAGGTGGTGAGAACATTAACAACCAATCAGCAGCA GCAGCAGCAACAGAAGATAATGAATGCATGGTGAGGGAGCAAGATCGTTTCATGCCAATTGCAAATGTGATAAGGATAATGAGGAAGATACTGCCACCAC ATGCAAAAATATCAGACGATGCAAAAGAAACAATACAAGAGTGTGTGTCTGAGTATATAAGCTTCATAACTGGTGAAGCCAATGAGCGTTGCCAAAGGGA ACAACGCAAAACTATCACCGCAGAAGATGTGCTTTGGGCTATGAGCAAGCTTGGCTTTGATGACTACATTGAACCTCTCACAATCTACCTTCACAGGTAC CGTGAGTTGGAGGGTGACAGAAGCTCAATGAGGGGTGAAGCACTCGGGAAGAGGAGTAGTTCTAGTGGTAGTGGTAGTGTGGAATATGGGACACTTGGTG TTGCTACTGCTTTTGTGCCACAGTTTCATCATCATCACCATCATCATCACTCAAATGGGTATTATGATCATGCTGCTGCTGCTGTTATGGGGAATTACAT GAGGGATGCTGCATCAAACAATCATAGTAATAATACCAACAATGCTGCATCTAAGGCTGCAACCATCACGAATGCTGATCAACCAATATGAATCACTATT TAATTACTACTCATCAAATCATACTCTTAACTCTCTAATCGCAATAACATTCCTTAATGTGGACCCTATCATCTTATGTGCCCATTCATTAAGCACTTTT AATTTTAATGCTCCTGTCTTTTTACTTAATATATACTTAATTATTTGGCTCAACCACGTTAGAGAAGCAGTAAAAACAACTCATAGTCTAATACTAATAC TAATATATATCGTTAATGAATGAAAGTTAGAGAAGCAAATAGTTATACTTATTCGCTTAAAAACAAGTAACTTATTTCTAAATTTGTCTATGCATCCTTA TATATTTAATTATTTGTATGACATGGACATGGCATTATCAACTATATATCTCTTTAATTAATACACCATTACTTCCACACTCATTTTTTTGGGATGTGTG ACAATTATTTCCTTATTACATGGAGCTTACAACACCGGATTTATTTAAACTCAATCACTCACTCACTTAAGAATGACACTCTTATTTTCTTTATTTCAAT CCCCGCCCTCTGCTTATTCATAACGTTTTAAACTAATTCCCAATAATAATCACTAAAATCTATTATAAACTAATACAATAGATTATGTGTACTTTAAAGT CATAAATTTTTTAAATATATATTAAAAATACAATTGGGAATATGTAAGGATTTGGGGGAAGACTATGTATATGTATCATAGAGATTCGTTAATCATATTC TATCAAGTAATATTTTTTCACTTAAACATCACCTTTTAGTTAAATTGATACACACATATAATAATAAAAGCGTGAGAGATTACCTCCGTTGATGCCCTTA TATACTATAAATTGTTGAGTTATTTTTGTAATAATACATATATATTTTTACATACAATTTTGTAGTTATTATTAATATGTAAGTTAAGATATAAAATGAT ATATTATTAATGGCATATAGGTGGAGCTGAGTCATGTTTATAAGGTGATAAAATGGAAGCATAGCATATTTGGGTATTGGGAATAATATTGTTGGATAAG GATCGCAATCATAATAATAGTTATACTATTCATATTTCCAACATCAACACCAACACCAACGTTGTTCGGTTGATTCCATGTCTTCTTCTTCTTCTTCCAC TTCTGCTTCTATTAAACCCCCACTTCCAGATGTCTGTATTGTTGGTGTTGCACGCACTCCAATTGGTGCTTTGCTTGGCACTCTATCATCTCTTTCAGCT ACACAATTAGGCTCAATTGCTATAACATCTGCTCTTAAGAGAGCCAATGTTGATCCTTCAGCTGTGGAAGAGTTGTTTTTTGGGAATGTTCTCAGTGCAA ATTTAGGACAAGCTCCTGCCAGACAAGCTGCATTAGGAGCTGGTATACCCACTTCTGTAATCTGCACTACTGTCAACAAGGTCTGTGCAGCTGGGATGAA AGCTACCATGCTTGCAGCACAGACCATACAACTCGGTATCAATCATATTGTTGTCGCCGGTGGTATGGAGAGCATGTCAAATGCACCCAAGTACATTGCA CAAGCAAGGAAGGGATCTCGGTTAGGACATGATACTCTCATTGATGGTATGCTCAAAGATGGCCTTTGGGATGTCTATAATGACTTTGGCATGGGTATTT GTGCAGAACTATGTGCAGATCAACATGCCATAACAAGATCTGAGCAGGTACTGTTCCTTGCTCAATCACCTTATCAATTTCTGTTATGGATTTCATGTTC TCTAGTTAAAGTACTTCATGCCTTAATTACTTTCATTACTTTCGCTGACTCCTCTAGCTGCCTCAGTTACTTTGAATGAAAATCAGTATCCACAGGGGTA GCTAGCATCCCCTCCTCTGTTTAAATTTTTATTCTGTTACCCCTCCCCACATGATTTTGGCCCCCTTGCTAGAACTCGCAGAACAATAAGAACGAGACCA GGTGCTACAGTAGGAAGGCTCCTGCCATATGCACAATTCAAGGAAGACTTGGATCCACTATGTGAATCTATAGTAGTAAGCCTTACCTTGCATTTGCAAA AAGGTTGATTTCAAGACTTGAATGCATGACCACCAAGTCACATGATGACAATTCCAACTATTGTGTCAAGACTGCCCTCAGCAAAGTAGTATTTCTTTAC TAAATATTTTCTAATCTCGATTAACAGCCTCTTCGCTTGCGAGGATAATATTATGTACATCTACCGTCCTAATACCTCACTAAGTGAGAATCTCATGCAC TGAGCCACCCTTTTGATTTGACAACTGTGTCTACTTGTGTCACATGACATTGACATTACTCCTCCCTCTCGAATACTTTTATAAACAACTTTAGTTGAAT CCAGGATTCATAACTTTGTTCTATTTTTCTATGTATACGTTTCTCAGGACTCTTATGCCATTCAAAGCTTTGAAAGAGGAATATCAGCACAAAATGCTGG TCATTTTTCTTGGGAGATAGTTCCGGTTGAAATTTCCAATGGAAAAGGGAAGCCTCACACACTTGTTGATAGAGATGAAGGTCTGGGGAAGGTAAATGCA TAAATGTACACATATTAACTAATAATCAAAATGGATTATCTAGTCTGCAGTACATACTAATAAATTTTACTTTTGCATTGTTATTATCACATGTCTGTTA ATCGTGTACTGACCAGTGTTGGTAGAAAATAAAATGTTTTGGGTGGTTCTATCTCATTATTTTTAGCTCTTGCTGAGTCTTGCCTCACTATTATAACTGA ACTGTAGAAGCCTTCAACTCAATTCTTATATTAAATTTACTTGCTCCATGGTCTTCGTCACATGCTTGGTATTGGAATATGGTGGAAACTCATGTGGTTA AGTGGTTTGCTTAATATTGATATTCATGTTGCTAGTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAACTTTAAGGAGGATGGGGGTACTGTGACTGC CGGCAATGCTTCTAGCATAAGTGATGGTGCTGCTGCATTAGTACTAGTGAGTGAACAGAAGGCACGCGAGCTTGGATTGCGAGTAATAGCAAAGATAAAA GGATATGCGGATGCGGCTCAGGCACCTGAATTATTTCCAACTGCTCCTACCCTTGCAATTCCAAAAGCTATATCGAATGCTGGTTTAGAAGCTTCTCAAA TTGATTACTACGAAATAAATGAAGCATTTTCTGTTGTGGCTCTTGCAAATCAGAAGCTTCTTGGTCTTAATCCGGAAAAGGTTAATGTGCATGGTGGAGC TGTATCATTGGGTCATCCACTGGGTTGCAGCGGAGCTCGTATCTTGGTTACATTATTAGGGGTAACTTGTGACCTTGGTTACTCTAGTTTTTTTCCCTCT TCCACTGATGTATATAAATTATTCTGTTTTATTCTCCGGATTTTTGGTGATCTTGGTTGTGTTGTGTTTCAGGTATTGAGAGAGAAGAATGGAAGGTATG GTGTTGCTGCAATTTGCAATGGGAGAGGAGGGGCATCTGCTATTGTCTGTGAGCTCATGTAAGCCCTCTTCTATCACTTTTGTTTAGAACTCATTCAAAA TAAAGAGAAGAATATGTTTCATTTTTATCAGAAGCTTCTTTCATCACTTTCTAATAAGGTTGTTGCATTTTGTAGGCCATTTGCAAGTTTGAGACGTACT TCATTATGATTTGGTGTCCTCACAGCTTACTGCATTCCAATTATATATACATCATTTTCTGAAAGTATAAAACATGTAATAAATTTGATTCAGGAAATAA GTCACATTACTTCATAACATATGAAATATAAGAAATATATGAATTATATTTTGAAGGCTATCAAGATGGGTAGCGAGAGAGTGAGGTTGGAATAGGACCT ATGTAATTTGAGGCATATGTTTCACTTTGGTCAAGTGCATGCCAATGTATTTGGTCTCTATTTTATGGTTCTAGAAATCTGAAGTATTATTAGCTTCAAA ACATGTTCTTAAGCCTACAAGTTTTATGCATACTTGTCCAACAACTTCAGAAGTATGTACTTGACAAATTCTAGTATTTGGAATCGATCTATACATTCAC ATATCACTTGGAGTTTACTCCTAACTTGCACAGTAGAGAAAGTTCAATCATCTTATAATGTTCTACTTGCACTTTTTAGGTAAATTTTCTAC BLAST
Tissuepods
Gene nameLI_gene_192139; 
Additional informationdetails; 

Expression of Ll_transcript_487342

Labels

PAB abscising pods
PNAB non-abscising pods
PS1 seeds stages 1-3
PS2 seeds stages 4-6
PS3 seeds stages 7-8
PW1 pods wall stages 1-3
PW2 pods wall stages 4-6
PW3 pods wall stages 7-8

Annotations of Ll_transcript_487342
BlastpNuclear transcription factor Y subunit B-6 from Arabidopsis with 66.07% of identity
BlastxProbable acetyl-CoA acetyltransferase, cytosolic 2 from Arabidopsis with 69.23% of identity
EggnogCore component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling(COG2036)
KeggLink to kegg annotations (AT5G47670)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019434947.1)
PfamCore histone H2A/H2B/H3/H4 (PF00125.23)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;
Links to GO: General; Genes and gene products; Annotations; Ontology;