| Id Trinity | TRINITY_DN52391_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_487961 |
| Sequence | ATAATTTTCAATTTCATTTCTCTCTCCATCTTCACTATCTCTCTCACAATTCAACTCTTCCCCCAAAGTTCTCGTAATTTCTTCTCTTTCTCACTCAACA CTTTCTAATTTAAGCATCTACATTCAAATTCCCACACTCTAACTTCATCACTCTCTACTGCTATTCTCTTCTGAATCTCCAACACCACACTCCACCAGAT CTGAACCCTCCCACACCAGATCCGAACCCTCCGCAATGGAGGAAGCGTTGGAGCTTGTTCGCGCCAAGGACGCAAAGGAACGCATGGCTGGAGTAGAGCT TCTCCATCAGCTTCTAGAAGCTTCTAGAAGAACCCTCACTTCTACGGAAGTAACTAACCTCGTTCGTTGTTGCTTGGATCTGTTGAACGATAACAGTTTC AGAGTCTCTCAGGGCGCGCTTCAAGCGTTGGCCTCCGCTGCCGTTCTATCTGCTGAGAATTTTAAGCTTCACCTCAACACGATTGTTCCGGCTGCCGTTG ATCGCCTTGGCGATGCGAAACAGCCGGTTCGGGATGCGGCGAGAAGGCTCTTGCTCACTCTTATGGAGGTTTCCTCTCCTACAATAATTGTTGAAAGAGC AGGGTCCTTTGCTTGGACATGCAAAAGCTGGAGAGTCAGAGAGGAGTTTGCACGAACTGTCACATCTGCAATTGGCCTATTTTCATCTACTGAACTTACC CTTCAACGGGTTATTCTTCCTCCCATTTTGCAGTTGCTGGATGATCCGAATCCTGCTGTTAGGGAAGCAGCTTGTTTATGCACTCAAGAGATGTATGCAC AAGCTGGGTCTCAATTTCGTGATGAACTTCAGCGTCACGATCTTCCTTCATCTTTGGTGAAAGATATTAATGCCAGGCTAGAGGGCATTCAACCAAAAGT TCGCTCTTCAGATGGTAGTGGTTACAATGCCGGGCAAATTAAGCCTTTGAATGTTAATCCCAAGAAAAGTAGTCCAAAGGCTAAAAGTTCATCAAGGGAG AGCTCTCTTTCTGGAGGAGATGGTAATGTCACAGAGAAACCCATAGACCACATCAAGGTGTATTCAGAGAAGGAATTAATCAGGGAAATTGATAAGATTG CATACACCCTTGTGCCAGAAAAGGACTGGTCAATTCGTATTGCTGCCATGCAGAGAATTGAAGGTCTTGTGTTGGGAGGGGCTGCTGATTTTTCATGTTT CCATGGACTCTTGAAGCAGCTTGTAGGACCTTTAAGCACACAATTGTCAGATCGAAGGTCTACCATTGTGAAGCAGGCTTGCCATCTATTATGCTTATTG TCAAAGGATCTCATGGGTGATTTTGAAGCATGTGCTGAAATGTTCATACCAGTCCTTCTGAAGCTGGTTGTGATTACTGTGCTTGTAATAGCTGAGTCTG CGGATAACTGCATAAAAACAATGCTGTGCAACTGCAAAGTTGCCCGTGTGCTGCCTCGCATTGCTGATTGTGCAAAAAATGATCGTAATGCAGTACTCCG TGCAAGGTGTTGTGATTATGCTCTTTTGATGCTTGAAAATTGGCCTGATGCTCCAGAAATACAGCGATCAGTTGATTTATATGAGGATATGATAAGGTGT TGTGTTTCTGACGCAATGAGTGAGGTGCGATCTACTGCAAGGATGTGCTACAGAATGTTTGCAAAAAGTTGGCCAGAGCGGTCCCGCCGCCTATTTTCGT TCTTTGACCCTTCTATTCAAAGGTTAATAAATGAAGAGGATGGTGGAATACATAGGCGACATGTGTCACCTTCCGTTCATGATAGAAGTACACGGATGCC ATTAACTACTCAAGCTTCTGTTCCATCTAATATACCTGGTTATGGAACTTCTGCTATTGTTGCAATGGGCAGAAATTCAAGTTTATCATCAGGGACATCT ATTTCCTCTAGTGTTTTTCTGTCACATGATAAAGGTACAGAACGTAGTTTGGAAAGTGTGTTGCATGCAAGCAAACAGAAAGTCTCTGCTATTGAAAGCA TGCTCAGAGGTTTGAATATGTCCGATAAGCATAATTTGGCTGCTCTACGGTCATCAAGTTTGGATCTAGGAGTTGACCCTCCATCATCTCGTGATCCACC ATTCCCTGCAGTTGTCCCAGCATCTAATCATCCGACTAGCTCTTCAATGACAGAATCAACTCCCTCTGTTGTCAATAAAGGTATTAACCAAAATGGTGGT TTGGGTCTGTCTGACATAATCACCCAAATTCAATCTTCCAAAGATTCTGGCAAGTTATCATATCATAGTGATGTTGGTATCCAGTCTTTATCAGCATTGC CATCATATTCAAGTAAAAGGGGTACTGAAAGATTACAAGAAAAAAGTTCCATTGACGAAAACAGTGACATTAAGGAGGCTAGGCGATATATGAACCCGGA CACCAATAGGCATTTTATAGATACACCTTACAGAGATGACAACTTCAGGGATTTTCAGAATAATTATGTGCCTAATTTCCAGAGGCCACTACTGAGAAAG AATGTAGCGGGACGTATGTCTGCTGGCAGGAGGAGTTTTGATGATAGCCATTTATCTCTTGTGTCAAATTATGTAGAGGGACCAGCATCTCTTCACGAAT CTCTGTGTGAAGGACTTAGTTCAGGTTCTAACTGGTCTGCTAGGGTTGCTGCCTTTAATTATCTCCACTCTTTGTTGCAGCAAGGTCAAAAGGGAACTCA AGAAGTACTGCAGAATTTTGAGAAGGTCATGAAATTGTTTTTCCAGCACTTAGATGATCCCCACCATAAAATTGCACAGGCTGCTCTTTCCACACTAGCA GATATCATTCTAGCATGCAGAAAGCCCTTTGAGGGTTATATGGAACGAATGCTGCCCCATGTGTTTTCTCGGTTAATTGACCCCAAAGAGCTTGTTCGGC AGGCATGCTCGGCAACTTTGGAGGTTGTTAGCAAAACATACAGTATAGATTCTCTCTTACCTGCATTGCTACGCTCACTCGATGAACAAAGGTCTCCAAA GGCAAAATTGGCTGTCATCGAGTTTGCAATTAGCTCCTTTAAGAAGCATGCAATGAATCCAGAAGGTGCTGCTAATATTGGCATCCTGAAATTATGGCTT GTTAAGTTAACCCCATTGGTTCATGACAAAAATACAAAGCTTAAAGAAGCAGCTATTACATGCATTATATCGGTGTACTCTCACTTTGATTCAACTGCAG TTCTGAATTTTATCCTTAGTTTGTCAGTTGAGGAACAAAATTCTTTGAGACGAGCCCTTAAGCAACGCACACCTCGCATTGAAGTGGAGTTGATGAACTA TCTGCAGAACAAGAAAGAGCGGCAACGTAAGTCTTCCTATGATCCATCTGATGTTGTGGGGTCATCTTCTGAAGATGGATATGTCGGCTTTTATAGGAAA AATCATTACCTTGGAAGGTATTCTGCTGGTTCTCTAGATAGTGATGGTGGAAAGAAGTTGACTTCCCACGATTCAACCATGATTAAAGCCAGTACTGGCC TAGCAGCTTCTGATGAAACTCAGGAGCATTCATATCAGAATCCTGAGATTGATTCTAATAGTGGTATTCTCGATTCAAAAAGTAAAGATCATACTTATAC ATTCAACATGGCTCAAAACTTTGGTTTTGAAACAAGCCAAGTAGGACATGTAGACAATAGTATAAACTTTGAGGGTCTATCATCTCATCTGGATGCTAAT GGTCTGATGTCATTAGAACATATAAATGTTTCTCAAGGCTTTGAAAATGACGAAGAACATCTTTCCGACTGGAACCATAATAATTATTCAGCTGAAGAAG TGACGGTTAACTCCATGACAGACACAGGGCCCAGCATTATTCAAATTCTTCATATGATATGCAGTGGGAGTGATGGAAGCTTTGTTTCAAATAAGAAGAC CGCACTTCAACGGCTAGTTGAAGCTTCTATAGCAAATGACCATGCTGTTTGGACCCAGTATTTCAATCAGATTTTGACTGCTATACTTGAGGTGCTGGAT GATCCAGATTCCTCGATTAGAGAGCTTACTCTTTCATTGATAGTTGAAATGCTTAAAAACCAGAAACTTGCCATGGAAAATTCAGTCGAGGTTGTAATTG AAAAGCTGCTTAATGTTACAAAGGACATTGTTCCTAAGGTCTCAAATGAAGCAGAGCACTGTCTGACCATTATTTTATCTCAGGACGATCCTTTCAGATG TTTAAGTGTTATTGTCCCTCTACTGGTTGCTGAGGATGAGAAAACTCTTCTTACTTGCATAAATTGCTTGACAAAGCTTGTGGGACGACTCTCGCAGGAG GAACTGATGGCTCAGTTACCCTCATTTCTGCCTGCTCTGTTTGAAGCTTTTGGAAACCAGAGTGCAGATGTCCGTAAGACTGTTGTTTTCTGTCTTGTTG ATATTTATATCATGCTTGGGAAAGCATTCTTGCCATATCTGGAAGGGCTTAACAGCACACAGTTGAAATTGGTAACTATTTATGCAAACCGAATCTCCCA GGCCAGGACAGGTAAAACAATTGATACTCATAATTAGCAGGTTCAGGGGGAAGAAAATTTGTGGGTTTTGGGTGTGTTCTTCTATGTTTAAAATTTGTGT ATTTTCTATATTGTGTGCATATTTTTGAGGTGGGTTTTCATTGTCTTTCCTTCCTCCCCTTTTGTCACATATATTCTGTCTTCTTTTTTCTCTACCAATA TTTGTGGGATTCGGAGAGTGTATTAAATGATTTTCGAGAAGGCCTCATTATGATTTGTTCATTGACTTGAATATTTGGATTTTGGTATGTAATTGTTTTG GGAAGCTGTTCTGTATGCTGTAATTTTGGTCACTCCATAATGGATGTAATTTCACCCTTACTAGACTTACTAGCTGTTGCCTCATACCGTCTTTGACACC ATTTTTTAACTGATTGGATATTGTTTGATGTCAATGATGCAGTGCAATACTGTTTCAAAAAAACTTAGTATAATTAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_192347; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_487961
| Blastp | CLIP-associated protein from Arabidopsis with 71.54% of identity |
|---|---|
| Blastx | CLIP-associated protein from Arabidopsis with 71.54% of identity |
| Eggnog | cytoplasmic linker associated protein(ENOG410ZMY0) |
| Kegg | Link to kegg annotations (AT2G20190) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019429579.1) |
| Pfam | HEAT repeat (PF02985.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |