| Id Trinity | TRINITY_DN52400_c3_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_349445 |
| Sequence | GTGAAGAGGCTCGCGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGACCCCAAAAACTGGCCTAATTCCAAATGGAGATGTCTCAAGGT GAAATGGGATAAACCGTCTAACAAAGCTCTTCCTGATAGAGTTTCTCCTTGGGATATAGAGCCATATCTTGCTCCTCCAGCTCTAAATCCTCTTTCAATG CCCAAACCTAAAAGGCATCGACCTATAGTGTTTCCATCATCCTCAGATTCATCTATTCTTACTCGAGACGGAGCTTCATCTAAAGTGAGTATAGACCCTT TACCCCAATGTGGATATCCAAGGGTCTTGCAAGGTCAAGAATTCTCGGGCTATGGGACTAATACAGATCTTTCTTCACATCTATCCTTGCAAAATCAACT AGGCCATGTAGCTAACCCTACTAAGAATCAAGGAAAACTTAATATGATGGGTAGTCCATGGTCTATGATGATGCCCTCTAGTTTATCACTCAACCCCATG AACTCTAATGTAAAAGGTGTGCATGGTGGTGATTCAACTAATCAAGTTCAAGGGAATTTGAGGCGTAGTGCATTTAGTGAATATCATGCGCTTCATCATG GTCATAAATTTGAGCATCCACGTAGAAACCTAATGATGCTACCACCACCCAATACTTCTGAAGTTGTGAGAGCAAAAGATGGCAACTGTAAGCTATTTGG CTTCTCACTTCTCAGTAGCCCCGCATCTTCGGGTACTTCTATGTCGGATAGAAATGTAGCCAATGAGCCACTTGGTGCATTGCATCTTCCATCACAGCTA CATACTACTTTTGAAAATGACCAGAATTCTGAAGATTTGAGGGGTTCCAAACCTGAGGATGTTGTAGTTGTTGCTGATGACCATGAGAAGCTTTTACAGA CTTCTCAGTCATACTTGAAAAATGTTCTACCCAAACCACATAGCACCTATGCTAGGAGCTACACTAAAGTTCATAAGAAGGGGGTTGCACTTGGTAGGTC TGTGGATCTTACAAAGTTCAATAGCTATGGTGAATTAGTTGCTGAATTGGACCAACTATTTGAACTTGGAGGTGAATTAACTTCTCCAAAAAAAGATTGG CTTGTTGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGTGACGATCCATGGCCGGAGTTTTGTGCCATGGTCTGCAAAATGTATATCTACCCAA AAGAAGAGATTCAGAAAATGAACCCTGGTACCCTTAGTTCAAAAAATGAAGAGAATAATCAGTCAGCTAGCGTAGGTGCAGACGTACAAGAAATTAAATG TCAGCTGCAGCATCCAGCTTCTGACACCTGATAATTTATAGGTTTTATCTGAATAGATTCTAGGTTTGGAAATGGAGTGGAAAGGAGGGGACTCTCATAA AACCATCCTGTTGGAGAAGAAAATTATATTTCTGAGTAACCATCCAGTTTTGGACAGTAGAATTAGTATATATATGCCTTTCTTAGTTATAGATTCCTAG TATAGTATATTATTGTGTCCTGTGCATGGTGATATAGGCTCATATCAACTTTTTGCATTTTCCAACCATCTTATTTCCTACCTTGTATATAGTCTTAGTT ATTCTCCCATTTCCTTAGAACCCAACCCATTAGTATGCATGTTTGTAATTATGTTTTAAGTTTCATGTGTAAGGGCTGTTTATCTGATCTTGAATTTGGT TGTCTCTTATTTTAGTTGTAATTTGTTGTATTATGGTCAACTTATGGAACTTATTGTGGATATCTATTTGCTTTTTGCATAATGTGTAATTAAATTTCCT ATATTTTTCACCAGAAATGATATATCATTCTATTAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_192415; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_349445
| Blastp | Auxin response factor 2A from Lycopersicon with 37.82% of identity |
|---|---|
| Blastx | Auxin response factor 2A from Lycopersicon with 43.55% of identity |
| Eggnog | auxin response factor(ENOG4110RNJ) |
| Kegg | Link to kegg annotations (778240) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019457943.1) |
| Pfam | AUX/IAA family (PF02309.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |