| Id Trinity | TRINITY_DN52400_c3_g1_i20 |
|---|---|
| Name Transcript | Ll_transcript_349465 |
| Sequence | ATCTAAAGTGAGCGAAGACCCTTTGCCTGCAAGTGGATATCCAAGGGTCTTGCAAGGTCAAGAATTGTCGACCTTGAGAGGCAACTTGGTAGAAGGCAAC AAGTCTGATAATGTCGAGAAGTCTGTTGTTTGGCCACCTACAGTTGATGATGAGAAGATTGATGCTGTTTATACTTCAAGAAAATATGGATCAGAGGGAT GGATGTCGATGGGGAGACTTGAAACATATTCAAATCTACTTTCAAGCTATGGGACCAGTATAGATATTTCTTCACATCTATCCTTGCTTAATCAAATTGG CCATGTAGCTAACCCTGCTAAGAAACATTTGGTGGATCGTGAAGGAAAAGTTAATGTGATGGGTAGTCCATGGTCCGTGATGCCCTCTAGTTTATCACTC AACCCCGTGAACTCTAATGCAAAAGGTGTGCAAGGTGGTGATACAACTTATCAAGTTCGGCGGAATTCAAGGCATAGTGCATTTGCTGAATATCCTTTAC TTCATCATGGTCATAAATTTGAGCATCCAAATGGAAACCTAATGATGCTACCACCACCAACAACTCAATATGAGAGTGCCTGTTCTAAGGAACTGTTTCT GAAATCAATATCACCCAATACTTCTGAAGTTGCAAAACCAAAAGATGACAACTGTAAGCTATTTGGCTTCTCACTTCTCAGTAGCCCAACTGCATCGGGT ACTTCTATGTCGCATAGAAATGTAGTCAATGAGCCACTTCGTGCCTTGCATCTTCCATCACACCTACATCATACTTTCGAGAATGACCAGAAGTCTGAAC ATTCGAGGGGTTCCAAACCTGCGGATGTTGTAGTTGTTGCTGATAACCAGGAGAAGCTTTTACAGACATCTCACTCGCACTTGAAAAATGTTCAATCCAA ACCACACAGCACCTCTGCTAGGAGCTGCACTAAAGTTCATAAGAAGGGGATTGCACTTGGTAGGTCCGTGGATCTTACGAAGTTCAGTGGCTATGATGAA TTAATTGCCGAATTGGACCAACTGTTTGAATTTGGAGGTGAATTAACTTCTCCAAAAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGTGACATGA TGCTTGTTGGTGACGATCCATGGCCGGAGTTTTGTGCCATGGTCTGCAAAATGTATATCTACCCAAAAGAAGAGATTCAGAAAATGAACCCTGGTACCCT TAGTTCAAAAAATGAAGAGAATAATCAGTCAGCTAGCGTAGGTGCAGACGTACAAGAAATTAAATGTCAGCTGCAGCATCCAGCTTCTGACACCTGATAA TTTATAGGTTTTATCTGAATAGATTCTAGGTTTGGAAATGGAGTGGAAAGGAGGGGACTCTCATAAAACCATCCTGTTGGAGAAGAAAATTATATTTCTG AGTAACCATCCAGTTTTGGACAGTAGAATTAGTATATATATGCCTTTCTTAGTTATAGATTCCTAGTATAGTATATTATTGTGTCCTGTGCATGGTGATA TAGGCTCATATCAACTTTTTGCATTTTCCAACCATCTTATTTCCTACCTTGTATATAGTCTTAGTTATTCTCCCATTTCCTTAGAACCCAACCCATTAGT ATGCATGTTTGTAATTATGTTTTAAGTTTCATGTGTAAGGGCTGTTTATCTGATCTTGAATTTGGTTGTCTCTTATTTAGTTGTAATTTGTTGTATTATG GTCAACTTATGGAACTTATTGTGGATAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_192415; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_349465
| Blastp | Auxin response factor 2B from Lycopersicon with 46.15% of identity |
|---|---|
| Blastx | Auxin response factor 2A from Lycopersicon with 45.06% of identity |
| Eggnog | auxin response factor(ENOG4110RNJ) |
| Kegg | Link to kegg annotations (101249712) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019457943.1) |
| Pfam | AUX/IAA family (PF02309.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |