| Id Trinity | TRINITY_DN52410_c0_g2_i11 |
|---|---|
| Name Transcript | Ll_transcript_349387 |
| Sequence | CGAATTCTGAACCCCAACGTTGTTCCTCTTTTGTTTTCTCTGTTCAGTGAATGTTAAATTGAAAAAACACTGAACTAACTTATCTGAAACCCTAACCCTA AATCACACCATGTATCTCTACAATCTCACTCTCCAGCAACCCACCGGCATCGTCTGCGCCATCAACGGCAGCTTCTCCGGCGGCAAGTCCCAAGAAATCG TCGTCGCCAGAGGCAAAGTTCTCGATCTCCTCCGCCCTGATGATAACGGTCGCATTCAAACCATCCTCTCCGTCGAAATCTTCGGTTCCATCAGGTCCTT AGCTCAATTCCGTCTCACCGGTGCTCAGAAAGATTACATCGTTGTCGGTTCCGATTCCGGTCGCATCGTAATTCTCGATTACAACAAGGAGAAGAACGTA TTCGATAAAATTCACCAAGAAACTTTCGGTAAATCGGGTTGCCGCCGCATTGTCCCGGGTCAGTTTATAGCTATAGATCCAAAGGGTAGGGCTGTTATGA TTGGTGCTTGTGAAAAGCAGAAACTTGTTTATGTTTTGAATAGGGATACTGCTGCTAGGTTAACTATTTCTTCGCCTTTAGAAGCTCACAAGTCTCATAC ATTAGTGTATTCAATTTGTGGGGTTGATTGTGGTTTTGAGAATCCTATTTTTGCTGCTATTGAGTTGGATTACTCTGAGGCTGATTTGGATTCCACCGGG CAGGCTGCGTCCGAAGCTCAGAAGCATTTGACGTTTTATGAGCTTGATTTAGGGTTGAACCATGTGTCTAGGAAGTGGTCTGAACAGGTTGATAATGGTG CTAATTTGCTTGTCACTGTTCCTGGTGGCGGCGATGGGCCTAGTGGAGTGCTTGTTTGTGCTGAGAATTTTGTTATTTATAAGAATCAGGGACATCAGGA AGTTAGGGCTGTGATTCCTCGGCGTGCTGATTTGCCTAGTGAGCGTGGTGTTCTTATTGTCTCGGCAGCCATGCATAAGTTGAAGTCCATGTTTTTCTTC CTCTTGCAGACTGAGTATGGAGATATTTTTAAGGTGACCTTGGAGCATGATGGTGACCGTGTCTCAGAGTTGAAGATTAAGTATTTTGATACTATTCCTG TTACAGCTTCAATGTGTGTTCTCAAGTCAGGCTTCTTGTTTGCAGCCTCGGAGTTTGGCAATCATGCTCTGTATCAGTTTAAGGCGATTGGGGATGATGA CGACGTGGAGGTGTCATCAGCTACCTTGGAGGAAACTCAGGATGGTTTTAAGCCGGTATATTTCAGGCCGAGAAGACTGAAAAATCTTGTCAGGATTGAC CAGGTCGAGAGTCTAATGCCAATAATGGATATGAAGGTCAGTAATCTTTTTGAAGAGGAAACCCCCCAGATTTTTACTCTCTGTGGGCGTGGTCCTCGTT CATCTTTGAGGATTCTGAGAACTGGTTTAGCAGTTAGTGAGATGGCAGTATCGAGGCTTCCTGGTATACCTAGTGCTGTTTGGACTGTGAAGAAGAATGT TATTGATGAGTTTGATGCTTATATCGTTGTGTCATTCACAAATGCTACGCTTGTGCTTTCCATTGGTGAGACAGTTGAAGAAGTTAGTGACAGTGGGTTT CTTGACACCACACCCTCCCTTGCTGTTTCCTTGATAGGTGATGATTCTCTCATGCAGGTTCACCCTAATGGTATTAGACACATTAGGGAGGATGGGCGTA TTAATGAGTGGAGAACTCCTGGAAAGAGGACAATTGCCAAAGTTGGATATAATAGACTTCAGGTTGTTATTGCACTGAGTGGAGGGGAGCTTATATATTT TGAAGTGGATGTTACTGGTCAGTTGATGGAGGTCGAAAAGCATGAAATGTCTGGAGATGTTGCTTGTTTGGACATTGCTCCAGTACCCGAAGGCAGACAA AGATCCCGTTTTCTGGCAGTAGGTTCATTTGACAAGACTATCCGCATCTTATCACTGGACCCTGATGATTGTATGCAGGCTCTTAGTGTTCAAAGTGTTT CTTCAGCTCCAGAATCTCTTCTTTTTCTTGAAGTTCAAGCTTCCGTTGGCGGCGAGGATGGTGCAGATCATCCTGCTAGCCTTTTCTTGAATGCTGGTTT GCAGAATGGTGTCTTGTTTAGAACCGTGGTGGATATGGTTACAGGTCAGCTTTCTGATTCTCGTTCCCGATTCTTAGGATTGAGAGCCCCAAAGTTGTTT CCTATTATTGTAAGAGGCAAGCGTGCCATGCTTTGCCTGTCAAGTCGACCATGGCTTGGTTATATTCACCAGGGACATTTCCTATTAACACCTCTTTCAT ATGAAACCCTTGAATACGCGGCTTCATTTTCGTCTGACCAATGTGTGGAAGGTGTAGTTTCTGTTGCTGGTGAGGCATTGAGGATTTTTACGGTTGAAAG ATTAGGAGAAACATTTAACGAGACTGTAATTCCATTAAGATATACACCAAGAAAGTTTGTGCTGCATCCCAAACGGAAACTTTTGGTGATAGTTGAGAGT GATCAAGGAGCATTAACTGCAGAGGAGCGTGAATCTGCAAGAAAAGAGTGTTTTGAGGCTACTCAGGCAGGGGAAAATGGGACTGGAAGTGACCCAATGG AGAATGGTGGCGAGGATGAGGATAAAGATGATGCACTCTCCGATGAACATTATGGTTATCCAAAAACTGAATCAGATAAATGGGTTTCCTGCATCAGAGT TCTTGATCCAAAGACAGGAAACACAACATGTCTTCTGGAGCTTCAGGAGAATGAGGCTGCATTCAGTGTATGCACAGTAAATTTCCATGATAAGGAATAT GGAACCCTGTTAGCTGTTGGCACAGCAAAGGGACTGCAATTTTTGCCCAGAAGGACTTTAACTGCTGGATATATTCATATATATAGGTTTGTAGAGGATG GAAGATCTCTTGAACTTCTTCACAAAACTCAGGTCGAAGGTGTCCCTCTTGCTCTATGTCAGTTTCAAGGAAGATTACTTGCGGGAATAGGACCTGTGCT CAGGCTATATGATTTGGGGAAAAGACGATTGTTAAGGAAATGTGAGAATAAGCTATTCCCCAACACAATTGTCTCTATTCATGCGTACCGTGATCGAATT TATGTAGGCGACATGCAAGAGTCTTTCCATTACTGCAAGTATAGGCGGGATGAAAACCAGCTTTACATTTTTGCGGATGATTGTGTTCCAAGATGGCTTA CTGCATCATACCACATAGATTTTGACACCATGGCAGGTGCAGACAAGTTTGGGAATGTCTATTTTGTGCGGTTGCCACAGGATGTTTCAGATGAGATAGA AGAAGATCCTACTGGCGGGAGGATTAAGTGGGAGCAGGGTAAGCTGAACGGAGCTCCCAATAAGGTGGAAGAAATTGTGCAATTTCATGTTGGTGATCTG ATCACATCTTTGCAAAAGGCATCACTTATACCAGGTGGTGGAGAGTGCATTGTATATGGAACAGCTATGGGAAGTATTGGGGCATTGCATGCTTTTACTT CACGAGATGATGTTGATTTCTTCTCTCATTTGGAGATGCATTTGAGGCAGGACCATCCACCTTTGTGTGGAAGAGACCATATGGCATATAGGTCTGCTTA TTTTCCTGTTAAGGATGTGATTGATGGAGATCTATGTGAGCAATACCCAACATTACCAATGGATTTGCAGAGAAAAATTGCTGATGAATTGGACAGAACC CCTGGAGAGATACTGAAGAAACTCGAGGAAATACGAAACAAGATTATTTGAGAGATGATCTTCAGAAAGGTCACAGCTTGCTGGTAGTGAGATCACTTAC AAAGGGTAGAAAGCTTGTGCTTCCATTTAATACTTGTAGCAGTAATTTCTTGCAAGAGGGAGGAATTGAAGAAGTACCGGATAGATTTAAGTCTTGATAT GATTTGTCTGCTAACTAGGGGTTAGATTAATATATCATAGAGAAGTTCAGATTTCTTATATAGTTTTGCTTCACTTAACACAAGATGGTTCTATGCATTC ACTGCTTTTGCAACCGTTTTGTTGAACTTAAACTCATGCAGTGGCCATAAATCCAAGAATAAGTGAAGCCAGGATGAATAAAAAGGAAGAGTATACAACA ACAACCAAGCTTTTATTTCATTATGTAGTCAATTATATAGATCGAATGATGTCGTAATGTTCTATCATAAATCATATCTATTGACAAAATATTAATTTTT AAGTCGTTTGTAATCATTTTACCAAAGTAATATTAAGATTATAAATTAACTTTTAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_192500; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_349387
| Blastp | Spliceosome-associated protein 130 B from Arabidopsis with 86.49% of identity |
|---|---|
| Blastx | Spliceosome-associated protein 130 B from Arabidopsis with 86.49% of identity |
| Eggnog | Splicing factor 3b subunit(ENOG410XPFQ) |
| Kegg | Link to kegg annotations (AT3G55200) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019427968.1) |
| Pfam | Mono-functional DNA-alkylating methyl methanesulfonate N-term (PF10433.8) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |