| Id Trinity | TRINITY_DN52412_c2_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_350177 |
| Sequence | GGAATGAAAGGTAAATGATAACTCATATATGCATATATTTTATTTTCTCTAAAAAAAAAAAGGGAGAAAAGAGAAAAATAATAATAATGAAAGAGAGAAA TGAAGGAAGAAAAAGCTGATAACAATTATAAGGAGGAGTTGAATTCCAACTTCAAATTCTGATAATTAAAAAAATAAAAAATACAAAGTTGCTTCACTTA TCTGATTTCATGTAACCTTCATCCATGGAACCCATTGATTTGTTTCGTAAAGGGTTTGGCTGAAGCTGACTGGAATTTATCGTCTATTGTTTTTAAAGAC CATTTATATTTTCGTAAAGTTTGTCTATATTCTAGTTAATGATGAGCTTATTCAAGACAGGATCCCTAACAGACACAAAGCTTAACTCCCCGGACAAGGC AACCACTTTGAATCCAAATGCAGCAGAGTTTGTTCCTTTTTCCCTCAGATCATCTCCATCGGGAAGTACTGGATCAGTAGATGCAACAGCCAGGCTCACT ACTCCTGGATCACTTGTGAAAGCAGTTTTAGATCGATCAGGATCATCTGTTTCAAATAATTCTGATGATGAGGCCCACCAGTTCTGGCGCTGTCAGCTCC CTGATGATATCACTCCCGACTTCAAGGTCATGGGAGATGAGTCCCAAGATCTTAACAATCTCTCTTTCGCGGCCTTATCTATACACGATGATGGTGATGA GTCTTCTAAGGGAAGTAGATTCATATTAAATGAGCAGCAGCACGTTAATGGAAATACTATAGCTGATGATAAATTTAGGTTTTCGAATTCAATCTACGGG GGGGAACCATCTTCGGCAAGCCTTTTGCGCCCTTTAGCAAAACCTTGGGATAGGCAAATTGGGAATACCAACCAGCTTGTTAGTGGCGTCCGAGAGGCAC TTACTTACAATGACAACTCTAGACATGGATTCTTAAATGATATTTTGTCTGATAGTGGGATTGTTGATGAGGCTAGTTTGAACCCCTTAGAGTTTTTAGC TTCTCTGTTCCCTGGTTTTGCATCAGAAAGCCTGGGTGAAGTTTACTTTGCCAATGGATGTGATTTACATCTGACCATTGATATGCTCACTCAGTTAGAG CTTCAAGTTGATGATAGCTTCAACCAGCAGACTTCAAAGGCTTTGTCAGCTCCCAATCTCACTGCGATGGACTTTCCTGCACTTACCTCACCAAATGGCC AGATTACTTCAGCAAAATATGCTACAGATAATGCCCAACAAAGTGGCAATCCTTACCTATCGTCTGGAAAAGACATGCTCATGTTCAGAACCAGCTCTTC GATTCCATCTAGAGGTGCTATCGACTTTGCTTCAGCTGTCAGGAAACTGGCTTCTCAGGATTCGGGTATATGGAAGTACAATAGAAATGGTTCTGGTGAT GCTTCCACGGGCTCAAGTAGGAGTTTAAATGTTTTGGCTAGTGCCTGCAATGGTGTACAGGGGAAAGCCAACTTTGGTGATAGGTCACAGAACCGTGGTT CTGCTCGGACAGCTCCTGTTTGGCTTGAAACCGGTGATGCTGTTGCAAATATGTATTCTGAGCTGCGGGAAGAGGCTCGTGATCATGCACGCTTACGAAA TGCATATTTTGAGCAGGCACGTCAAGCCTACCTTATCGGCAATAAGGCCCTAGCAAAAGAATTAAGTGCTAAGGGGCAAGCACACAACACACATATGAAA GCAGCTCATGGAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_192520; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_350177
| Blastp | Polyadenylate-binding protein-interacting protein 7 from Arabidopsis with 54.14% of identity |
|---|---|
| Blastx | Polyadenylate-binding protein-interacting protein 7 from Arabidopsis with 54.87% of identity |
| Eggnog | smr domain containing protein(ENOG4111EZQ) |
| Kegg | Link to kegg annotations (AT2G26280) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448014.1) |
| Pfam | Ataxin-2 C-terminal region (PF07145.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |