Id Trinity | TRINITY_DN52412_c2_g1_i10 |
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Name Transcript | Ll_transcript_350187 |
Sequence | ATCACCCATTCCTGTATCATGTCATTAGTGATAATATTGTTGGATTCGTTTGTGTAGTACTTAATTATGAAACTTGTGGAATTTGTATTGGTGTTGAAAT TTTATTGGGAGTTTGGTTGATCAACTAGTATGATCAAATTAAATTATTTTGCAGGGTTTGGTTGAAGCTGACTGGAACTTGGCCACTATTGTTTTTAAAG ACCATTAATGTTTTAGTAAATTTTGTCCATGTTCTAGTTAATAATGAGCTTATCCAAGTTAGGATCCCAAACAGACACAAGGCTTAGTTCCTCGGACAAG GCAACCACTTTGAATCCAAATGCAGCAGAGTTTGTTCCTTTTGCCCTCAGATCAACTCCATCGAGAAGTACTGGATCTGTAGATCCAACAGCTAAGTTCA TTACTTCTGGGTCCCTTGGTAAAGCAGTTTTAGATCGATCAGGATCATCTATTTCGAATAACTCTGATGATGAGGCCCACCGGTACTGGCATTGTCAGCT CCCTGATGATATCACCCCTGACTTCAAGGCCATGGAAGAAGATGAGTCCCAAGGTCTTAACAATCTCTCTTTGGCTGGCTTATCGATACATGATGATGAT GAATCTTCAAGGTTTCCTTCTATGGGAAGTAGATTCATATTAAGTGAGAAGCAGCACCTCAATGAAAATAATATTGCTGCTGATAAATTTAGGTTTTCAA ATTCAAACTACAGGGTGGAACCATCTTCCGCAAGCCTTTTGAGCCCGTTAGCAAAGCCTTGGGATAGGCAAATTGGGAATGCCAACCAGCATGTTATTGG TGGTCGAGAGGGACTTATTTATGATGACAACTCTAAACATGGATTCTTAAATGATATTTTGTCTGATAATGTAATTGTTGATGATACTAGTGCGAACCCT TTGGAGTTTTTAGCTTCTCTTTTCCCTGGCTTTGCGTCAGAAAGCCTGGCCGAAGTTTACTTTGCCAATGGATGTGATTTACATCTGACCATTGATATGC TCACTCAGTTAGAGGGAAGAGCTGGTGCAATTATAAAGTTGTAAGGCGACTCCGGTTTGTAGTTACTGATTCCTGAATCCTGACACCCCATGTGATTCAT GCTATGAAGGAGTTATTGGCATTTTATTAGCATTATTTCGATATATAATCATTTATTGGTATAAGATATAGTAATACAACCATGTCTCTAGATTGTCTTT CATTGTGTTGTTGTCATTGTGACTTGTCATGAACGCTACTCATTTCTTTGGCGTCCTTCTTAATGAAGGAATTATATGTTGATCACCTCCATTTTTTCCC TTCCAAACTTGTAGCTTCAAGTTGATGATAGCTTCAATCAGAATCTGAGTTCAAAGGCCTTGTCAGCTCCCAATCTAACGACAATGGACTTTCCTGCACT TACCTCACCAAATGGTCAGATCACTTATGCAAAATATGGTATGGATAATGCCCAACAAAGTGGCAATCATTACCTATCATCTGGAAAAGACATGCTCATG TTCAGAACTAGCTCTTCAATTCCATCTAGAGGTGCTATCGACTTTGCTTCAGCTGTCAGGAAATTAGCTTCTCAGGATTCTGGTATATGGAAGTATGATA GAAATGGTTCTTGTGATGCTTCAACTGGCTCAAGTAGAAGTTTAAATGTTTTGGCTAGTGCCTACAATGGTGCACAGGGGAGGGCCAACTTTGGTGATAA GTCACAGAACCGTGGTTCTGCTCGGACAGCTCCTGTTTGGCTTGAAACCGGTGATGCTGTTGCAAATATGTATTCTGAGCTGCGGGAAGAGGCTCGTGAT CATGCACGCTTACGAAATGCATATTTTGAGCAGGCACGTCAAGCCTACCTTATCGGCAATAAGGCCCTAGCAAAAGAATTAAGTGCTAAGGGGCAAGCAC ACAACACACATATGAAAGCAGCTCATGGAAAAGCTCAAGAATCTATTTACCGTCAAAGGTGTGTTCCCATCTGCTTCCACTATTTCCTATCCATGTGAAT TTTGGTTAAATAAAGTGACTTGTGTGGTGTCGTGATGGCAATATATATCTTGCAATGATTCACTGTACTGGATAATGAATTGGTGTGACTTTTAATTTAT GTTAAATTGTCTGAACCAACATCGGACCGGTTGTTGTCATCAGAACTACATCGAAACATAAGAAATATATAATAATATTTGGGAAATGTGGAAGGTAGCT TTTATTTTTTATTATTTGAAATCATGATTGATTAGTTCAATTAGATTTTGACTAGTTTTTTATTGCTCCTTAGTAGTTTCAAAATCAATCCAGTTATGAT GGTCAACCATTACTGGTTAAGTGGCCGGTTCACAGTTAGACTAATTGCACTTTTTGGCCGGTTCACAGTTAGACTAATTGCACTTTTTGGCCGGGTACAG TTTTAACTTTTAATTGCACTGCTATTTTGCTGCCCTCTCTATAACAATATGATGAGAGTTTCTTTTGACAAACTGGCTCTGTTTGTTAATTTTAACAACT TGTACTTTATCCGATTTTAACAACACTTGTACTTCATCCGATTTTAACAACACTTGTACTTTATCCGATTTTAACAACACTTGTTTCTCTGCCTACTTGA TGTCTATTGAGAAGTATAATGATGGTCTCACATTGGTTGTGACTTGAGAAATGTGAAAAATCTGAACCTTTCAAATAAAATTTTGAAGTCTCTTGGGGAA AATTTGTTAGAGAAATAAGTTACAGGTAAGACTATGATTATTTCATTGATAAAACATACATGCCTACTTCCTAAAGTGCTGCAGCTATTTCTTTTCCTTT CCCTCATGAGTAGAGGCTGCTAAGTAGTTTCTTTCTGGAATGATTACTTCGACAAAATGCTCTATATTGTTCTACGAGCTAGAGTGTTCCGTTTCATTGT TCTAATTTTCCGCACTATCCTTTGGTAAACGTGCATATGTTGATTTTGCAGGAACCCTGCTGGTTCCCAGATGCTGCAGGTCAATGGAAGAGGGCATGAG AGGATGATAGACCTGCATGGGCTGCATGTAAGTGAAGCCCTTCACGTGCTGAAACACGAATTGAGTGTCCTAAGAAGAACTGCCAGAACTGCCGAGCAGC GTTTGCAGGTTTATATCTGCATTGGTACCGGTCACCATACGAGGGGTTCCCGCACCCCTGCAAGACTTCCAATAGCTGTACAACGTTATCTACTTGAAGA AGAGGGCCTTGACTTCACAGAACCACAGCCAGGCCTGCTTCTTGTTGTGATATATTGAGCCAAGGTGGTATACAAGTTTTTGACACAGTAAAAATCCATC AACACAGACAGTGTAATCATTCTTGTATATGTATTATATGAGATGTCCAAGCCTGAAGAAAATGATAAAAAAAATTGGACAAGTTTAGTAGGATTTTTGC AGAATTGTACCATTAGTTACTAGTTAGTGGGGACTCCACTCTGTTAATTTTGTACCCTACTTTTCATTTTTTTGTTTTAGCTTTTCTTCTTTTGATCTAG ATATAACCAATAGTACTCAATTACTTGATACAACAATTCACTTTGCCAATCAGATTCAATGCCAAATAATCCACAGCAGGCCTTCAATTTTACCTCTGAA CATGGTAACATTAGTTCAGTGGTGAGAATTGTAGATATCTTACAAATCACATGGTTAGCACGCT BLAST |
Tissue | pods |
Gene name | LI_gene_192520; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_350187
Blastp | Polyadenylate-binding protein-interacting protein 7 from Arabidopsis with 50.19% of identity |
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Blastx | Polyadenylate-binding protein-interacting protein 7 from Arabidopsis with 62.28% of identity |
Eggnog | smr domain containing protein(ENOG4111EZQ) |
Kegg | Link to kegg annotations (AT2G26280) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019436179.1) |
Pfam | Ataxin-2 C-terminal region (PF07145.14) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |