Id Trinity | TRINITY_DN52412_c2_g1_i8 |
---|---|
Name Transcript | Ll_transcript_350185 |
Sequence | TTTTTTTTATGTATAAAGTTCAGATCTTTGACTAACCCTTCTCACTAATTTTCAGCTTCGTTACGTTTTCTTTGTTTTCTAGTAATTGGGTATGTTTTAT TCCTTTTTTGAGGCGTTGAATTGCTCTCGATCTCTTAAAGTTTGCGGCTTCCGTGTTGTGAGTCTGGTTGATCAATGAGCAGGATCAAATTGGGTTTGGT TGAGTCTGACTGGGAACGTGCTGTTATTGTTTATTGAGCATATCTATGTTGTAGTTATTTTGTCCGTACTGTAGTTAATGATGAACTTATCGAAGAAAGG ACCTCACACCGATACAAAACTAGGCATTCCAAACAAGGCAACCACTTTGAATCCAAATGCAGCTGAGTTTATTCCCTTTTCGCTCCGATCATCGCTGTCT AGAACTACTAGCTCAGTTGATTCAACAGCCAGGGGAGCTCTTGGGAAAGCTGTTGTAGATCGAACAGAATCATCCATTTCAAATAATTCTGATGATGAAG TGCACCAATACTGGCGATGTCAGCTCCCTGATGATATAACCCCTGATTTCAAGTTCACAGGAGAAGAGGATCCCCAGGGTCTGAATGACCTCTCTTTAGC ACGCTTATCCATACACAGCGACAATGAAGCCTCGGTGTTTCCTTCTTCTAAAGGGAGTAGATATATATTAAATGAGCATGATGAATTATCTCAACAGCTC ATTAACGACAGTAATTTTGCAGATAAATTACGGTTTTCCAATTCAAGCTACAGGGAGAACCTGTCTTCAACAAACTTCCTTAGCACTTCAGCAAAGCCAT GGGATATGCCAATAGGGAGTACCGACCACCATGTTAGCAGTGGTCAAGAGGGGCTTACTTATGATGACTACTCTGGACAGGGATTCTCAAATGACATTTT GGTTGAGAATTCAATTATAGATGATACTGGTTTGAATCCTTTGGAGTTTTTAGCTTCTCTATTCCCTGGTTTTGCAGCTGAAAGCATAATAGAAGTTTAC TATGCTAATGGATGTGATTTACATCTGACAACTGAGATACTCAATCAGTTAGAGGTAGTTGATCTTCACTTAATAACCGACGTTTGGTTAAATTGTGGTT CCTTATAAATCTCCTATTGTGTGTTTGCCTGTAAAAGTGTATATGTTCAGTTATATTCATGTGTGGTATTTATTCCTAGCATATTGTAATGCAATATGTT TTAGTAGAATACTACATCTGATGGGATGGATGCTAAGTATTTAGAGCAATACCTGTGGCTTGTTTTGGCAGGGAAGAGCAATCTCCCCATAAAGTTCTCA AGTGATTCAGGTGTAACACAGCTTCCAGTTTCTAATCCAAGTTGCCTGGTACTGGGGTAGTGGGTTGTTTGAGACTTATAGATAATTTCACCCTTTGGTT TTGATCTGCATCTTTCTGAGTTTGGTTATGTGATGTTGGTCCACTGTCATTTTGTTAGAATTTTTGTGAGAAACATAATCTCTTCTGGCATGTGATCAAG TAGTATACTTTGTTGTTCTTTCTGTGCTGTCATTTTTAATCATAAATTCATTATTACTTATTGCCAAGGCACTTTATACTGATTATCTCTTTTTATTCAC CCACCCCCTACAAATGTGTAGCTTCAAGTTGACGGTAATTTCAACCAGAATCTGAATTCCAAGACTTTGTCAGCTCCCGATCTCAGTGCAATGGACTTTC CTGCACTTACTTCACCAGATGGCCAGACTGCTTCTGTAAGATTTGCTGTAGATAGTGTTCAACAAAGTGGCAATCCTTACCGATCGCCTGACAAAGACAT GCTTTTTTCCAAATCTAGCTCTACAGTTCCATCTAGAGGTGCTGTTGACTTTGCTTCAGCTGTTGAGAAGCTGGCTACTCAGGATTCTGGTATTTGGAAG TATGATAAAAATGGCTTTGGTGATGTTGCCATTGGCTCAAGTAGGAGCTCTCATGTTCTGGCCAGTGGCTACTATGGTGGACATGGGAGAGCCGACTTTG GTGATAGGTTACAGAGCCGTGGCTCAGCTCGGGCAGCTCCTGTTTGGCTTGAAACCGGTGACACCGTTGGTAAATAATTGTGTTTATATGCTTCGATTTG GGATAAGTTCCTTCTAGATTTTGTTTTTTAAACAACTTTGCATGGCAGCAAATATGTATTCAGAGATGCGGGAGGAGGCTCGTGATCACGCACGCTTATG TAATGCATATTTTGAGCAGGTGGGCCTGAGTTCATGCTTTGAAGAAGTTAATGGCAAGTGAATGAGAATATAAAGTCGTGATTTCTGCTACTTGCTTAAC TGATATTGACACAAATTCCCTTGATTTTTTACATCTTTTTTTTCCTCCCGAGTTAGTCTTCATTTTAGTTTAGCATCTCTCTTTTAGAAGAAACTTTTTA ATGACATATAACTCCGGATAATCAAGTTGGGACAGGATAGGGCGAGTAGATTTAATGAAAGGAGCTTTTGGGCTGATGCAAAACATGAATATGAATGAAC AATTAAGTTCCTACCAGAATTCTTGGGTGTGTTTTTGTTTAACCTTACATTTTGTGTTTAATAGTTTAGAATTTGTAAACAGGCGCAGCAAGCTTATCTT ATTGGCAATAAGGACCTAGCAGATGATCTAAGTGTTAAAGGGCAACTGCACAGCATGCATATGAAAGCAGCTCATGGAAAAGCTCATGAATCTATTTACC GCCAGAGAAACCCAGTTGCTCCAGATATGCAGGGAAATGAAAGGGAACACGAGAGGATGATAGATCTACATGGATTACATGCAAATGAAGCGATTCATGT ACTTAAACATGAATTAAGTGTGCTGAAAAGCAATGCCAGAGCCGCGGAGCAATTTTTACAAGTTTATATTTTTGTTGGCATAGGTCAACATACAAGGGGT TCTCGCATTCCTGCTAGACTTCCAATAGTTGTACAGCGATTTCTACTCGAAGAGGGCCATGACTTCACAGAACCTCAGCCAGGCGTACTTCGTATTGTGA TATACTGAGCCATGTATAATGTGTACAAGTTTTTGACACAGTTAAAAGTCACATGTAGACATTGTAGTCATTCTTGTATCTCTGTATATGAGAAGTAAAG GCACTATCCGAAAAGAACAAAAAAGGGTTAGGGGAGAAAAAGAAAAGAAAGAGAAGGGTTGTAGTAAAATTGTATCATTAAGGTTTAACAGCAGCAGCAG ATTGTTACATTAGTCAGCAGGATATCACATCAGCCCATGTTATTATGGGGTCATTTTACGTTTGTTAATCTTGTACTCCAATTTTTACTTTGTTAAATTC CTTTTTCTCTTGATTCAGAGGTAACTAATTCAATTACATCTTTAGCAACCACTTACATTTTCGATAGTAC BLAST |
Tissue | pods |
Gene name | LI_gene_192520; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_350185
Blastp | Polyadenylate-binding protein-interacting protein 7 from Arabidopsis with 46.21% of identity |
---|---|
Blastx | Polyadenylate-binding protein-interacting protein 7 from Arabidopsis with 70.14% of identity |
Eggnog | smr domain containing protein(ENOG4111EZQ) |
Kegg | Link to kegg annotations (AT2G26280) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019414985.1) |
Pfam | - |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |