Ll_transcript_348918

• Id Trinity: TRINITY_DN52418_c0_g1_i1
• Name Transcript: Ll_transcript_348918
• Sequence: TTGTATGGCTGTTACTAACAAAGGATAAATAAATATTGGTTTAGAAGCTGAGGAAAGTGTTCCTTTCAAAAACATAACACAAAGCAAAGTGAAGAAGAAG AAGAAGAAGTGTGGTTGATTCTGCATATAATCAGAGGCAGAGTTCTCTCTTTTTGTTCTATCTATCATTACCTTCTTCTACCTTTTCACACACTCAGGTG TTTCAAAAATGGCTGCAACTGCAAGAGCTGTGCCATCTTCGTTTTCAACCATCAACACAAGGGATTCCAATTATGGGTTTGCAAAAAGTAGGGATTTTGT GAGAGTTTGTGATTTGAAGAGAGTGAAAAATGGGAAGACAAGGGTTTTAGTTATCAGGAATTCTTCAAATCCTGCTCAGGATATTGCACAGCTTCAACCT GCATCACAAGGAACCCCACTTTTGGTTCCTAGGCAAAAGTATTGTGAATCATTAAACCAAACTATTAGGAGGAAAACAAGGACAGTGATGGTTGGTGATG TGTCTCTTGGTAGCGATCATCCTATAAGAATTCAGACAATGACTACAACTGATACAAAGGATGTAGCTGGAACAGTTGAACAGGTAATGAAAATAGCTGA CAGAGGAGCTGATATTGTACGGATAACAGTTCAAGGGAAGAAAGAAGCTGATGCATGTTTTGAGATTAAAAACTCCCTTGTGCAGAAAAACTACAACATA CCATTGGTGGCTGATATTCATTTTGCCCCTGCTATCGCTTTGCGAGTTGCTGAATGCTTTGACAAGATTCGTGTCAACCCTGGCAATTTTGCTGATAGAC GGGCTCAATTCGAACAATTAGAGTACACAGAAGAAGATTATCAGAAAGAGCTTGAGCATATTGAACAGGTTTTCACACCATTGGTTGAAAAATGTAAGAA ATATGGGAGAGCAATGCGCATTGGGACAAATCATGGCAGTCTTTCAGATCGTATAATGAGCTACTATGGAGATTCTCCTCGGGGAATGGTTGAATCTGCT TTCGAATTCGCAAGGATATGCCGAAAGTTGGACTTTCACAATTTTGTTTTCTCTATGAAAGCGAGCAACCCGGTTATCATGGTCCAGGCATACCGCTTAC TTGTAGCTGAAATGTATGTTCAAGGCTGGGATTATCCATTGCACCTGGGAGTTACTGAAGCTGGAGAAGGTGAGGATGGGAGGATGAAGTCTGCAATTGG AATTGGAACTCTTCTTCAGGATGGATTGGGCGATACAATTAGGGTTTCTCTCACAGAACCACCCGAGGAGGAGATAGATCCTTGCCGAAGGTTGGCAAAC CTTGGAATGAGAGCATCTGAACTTCAGAAAGGGGTGGCACCTTTTGAAGAAAAGCATAGACATTATTTTGACTTCCAGCGGCGATCCGGTCAATTGCCAG TGCAAAAAGAGGGTGAGGAGGTGGATTACAGAGGTGCTTTGCATCGGGATGGTTCTGTTCTCTTGTCAGTCTCCTTGAATCAGTTAGAGAATCCGGAGCT GCTATACAAGTCACTTGCTGCCAAACTCGTTATTGGCATGCCATTTAAGGATCTGGCTACAGTAGATTCAATCTTGTTGCGGGAACTTCCTCCAGTTAAT GATGCTAATGCTCGGCTAGCTCTCAAAAGACTGATAGATATAAGTATGGGGGTTATAACTCCTTTGTCGGAGCAGCTAACAAAGCCATTACCCAATGCCA TAATTCTGGTGAACCTCAAGGAACTATCTACTGGAGCTTATAAGCTTTTGCCACAAGGCACACGCTTGGTTGTGTCGGTACGTGGTGATGAGCCTTATGA AGAACTGGAAATTCTCAAAGGTGTTGATGTTACTATGATTCTCCATGACCTGCCGTACACAGAAGAGAATGTTAGTAGGGTTCATGCAGCAAGGAGGCTA TTTGAGTACCTATCAGACAATTCTCTGAACTTTCCTGTCATTCATCACGTTCATTTTCCAACTGGGATTCACAGGGACGATTTAGTGATTGGTGCCGGTA CTAATGCTGGAGCCCTTCTGGTTGATGGGCTTGGAGATGGTCTTCTTTTAGAAGCCCCAGACCAGGAATTTGAATTTCTAAGAAATACATCTTTTAATTT GCTGCAAGGCTGCAG
• Tissue: pods
• Gene name: LI_gene_192544;
• Additional information: details;

Expression of Ll_transcript_348918

FPKM

• PAB: 23.2
• PNAB: 26.1
• PS1: 57.4
• PS2: 44
• PS3: 58.2
• PW1: 21.8
• PW2: 22.2
• PW3: 26.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_348918

• Blastp: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic from Arabidopsis with 83.12% of identity
• Blastx: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic from Arabidopsis with 83.12% of identity
• Eggnog: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity(COG0821)
• Kegg: Link to kegg annotations (AT5G60600)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019458594.1)
• Pfam: GcpE protein (PF04551.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;