| Id Trinity | TRINITY_DN52418_c0_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_348935 |
| Sequence | TTGTATGGCTGTTACTAACAAAGGATAAATAAATATTGGTTTAGAAGCTGAGGAAAGTGTTCCTTTCAAAAACATAACACAAAGCAAAGTGAAGAAGAAG AAGAAGAAGTGTGGTTGATTCTGCATATAATCAGAGGCAGAGTTCTCTCTTTTTGTTCTATCTATCATTACCTTCTTCTACCTTTTCACACACTCAGGTG TTTCAAAAATGGCTGCAACTGCAAGAGCTGTGCCATCTTCGTTTTCAACCATCAACACAAGGGATTCCAATTATGGGTTTGCAAAAAGTAGGGATTTTGT GAGAGTTTGTGATTTGAAGAGAGTGAAAAATGGGAAGACAAGGGTTTTAGTTATCAGGAATTCTTCAAATCCTGCTCAGGATATTGCACAGCTTCAACCT GCATCACAAGGAACCCCACTTTTGGTTCCTAGGCAAAAGTATTGTGAATCATTAAACCAAACTATTAGGAGGAAAACAAGGACAGTGATGGTTGGTGATG TGTCTCTTGGTAGCGATCATCCTATAAGAATTCAGACAATGACTACAACTGATACAAAGGATGTAGCTGGAACAGTTGAACAGGTAATGAAAATAGCTGA CAGAGGAGCTGATATTGTACGGATAACAGTTCAAGGGAAGAAAGAAGCTGATGCATGTTTTGAGATTAAAAACTCCCTTGTGCAGAAAAAGTAAGTATAA ATTATTGTGAGCTATATTGGACACGGTTGATGCTGTAAGCCCATGTTGTTTATGTTTCCAACCTTGTCCAGCTACAACATACCATTGGTGGCTGATATTC ATTTTGCCCCTGCTATCGCTTTGCGAGTTGCTGAATGCTTTGACAAGATTCGTGTCAACCCTGGCAATTTTGCTGATAGACGGGCTCAATTCGAACAATT AGAGTACACAGAAGAAGATTATCAGAAAGAGCTTGAGCATATTGAACAGGTTTTCACACCATTGGTTGAAAAATGTAAGAAATATGGGAGAGCAATGCGC ATTGGGACAAATCATGGCAGTCTTTCAGATCGTATAATGAGCTACTATGGAGATTCTCCTCGGGGAATGGTTGAATCTGCTTTCGAATTCGCAAGGATAT GCCGAAAGTTGGACTTTCACAATTTTGTTTTCTCTATGAAAGCGAGCAACCCGGTTATCATGGTCCAGGCATACCGCTTACTTGTAGCTGAAATGTATGT TCAAGGCTGGGATTATCCATTGCACCTGGGAGTTACTGAAGCTGGAGAAGGTGAGGATGGGAGGATGAAGTCTGCAATTGGAATTGGAACTCTTCTTCAG GATGGATTGGGCGATACAATTAGGGTTTCTCTCACAGAACCACCCGAGGAGGAGATAGATCCTTGCCGAAGGTTGGCAAACCTTGGAATGAGAGCATCTG AACTTCAGAAAGGGGTGGCACCTTTTGAAGAAAAGCATAGACATTATTTTGACTTCCAGCGGCGATCCGGTCAATTGCCAGTGCAAAAAGAGGGTGAGGA GGTGGATTACAGAGGTGCTTTGCATCGGGATGGTTCTGTTCTCTTGTCAGTCTCCTTGAATCAGTTAGAGAATCCGGAGCTGCTATACAAGTCACTTGCT GCCAAACTCGTTATTGGCATGCCATTTAAGGATCTGGCTACAGTAGATTCAATCTTGTTGCGGGAACTTCCTCCAGTTAATGATGCTAATGCTCGGCTAG CTCTCAAAAGACTGATAGATATAAGTATGGGGGTTATAACTCCTTTGTCGGAGCAGCTAACAAAGCCATTACCCAATGCCATAATTCTGGTGAACCTCAA GGAACTATCTACTGGAGCTTATAAGCTTTTGCCACAAGGCACACGCTTGGTTGTGTCGGTACGTGGTGATGAGCCTTATGAAGAACTGGAAATTCTCAAA GGTGTTGATGTTACTATGATTCTCCATGACCTGCCGTACACAGAAGAGAATGTTAGTAGGGTTCATGCAGCAAGGAGGCTATTTGAGTACCTATCAGACA ATTCTCTGAACTTTCCTGTCATTCATCACGTTCATTTTCCAACTGGGATTCACAGGGACGATTTAGTGATTGGTGCCGGTACTAATGCTGGAGCCCTTCT GGTTGATGGGCTTGGAGATGGTCTTCTTTTAGAAGCCCCAGACCAGGAATTTGAATTTCTAAGAAATACATCTTTTAATTTGCTGCAAGGCTGCAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_192544; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_348935
| Blastp | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic from Arabidopsis with 87.79% of identity |
|---|---|
| Blastx | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic from Arabidopsis with 79.54% of identity |
| Eggnog | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity(COG0821) |
| Kegg | Link to kegg annotations (AT5G60600) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019458594.1) |
| Pfam | GcpE protein (PF04551.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |