Ll_transcript_348561

• Id Trinity: TRINITY_DN52420_c0_g5_i1
• Name Transcript: Ll_transcript_348561
• Sequence: TGTTGATAGAACCTCTTCCTTCAATTAGCAAGGTGTTTTCAATGTTAACTAAACAAGAAAGACAATTCAATTTTCCTGTTTTCCCTGACCTCAAGGCTTT GGCTATTCAGTCTCAAGGAACTTCTCAGCTTAGAGGGGAAGTAATTTGTTTAGAGGAAGAGGAAGGATGCTTGGTAGAGGAAATGCAGGTAGATTTTGCA CTTATTGTGAGAGAGTAATCATACTGTGGACACATGCTTCCTCAAGCATGGTTATCCACCTGGTTATAGCTACAACAGGTTTGGCAAGGCTGCTAATGTT GTGAGCAATTTTCCTAATCATCCTATGCAGCTTGAGCATGATCAGGATAGAATGAGTCATCAGAATCAGGAACATTTGGTTCTCAATCAGGAAAACAAGG GTCATGGTTTCACTGAGGAACAAGTCAAATCCATCCTAGACCTGCTTGAGAGAAACAAAAGTGATGTCAACGAGGTGAATTCTGTCAAGATTGATCATGC CACTTCTACAAACAGTGTTGGTTCTCATTCAACATGTAATAAGTGTATGGACTGGTTGATTGATACTGGAGCTATTGATCACATTGCTTGTGATATAGAT AGCTTCAGTAGTCAAAAATTCATTTCTCCTGTGATGATTACATTGCCTAATGGAGACAAAGTGGCCACTTCTGTTTGTGGCACTGTTAATTTGTCTCAGT CTCTCACTCTCTGTGATGTGTTATATGTGCCACAATTCCATGTCAATCTAGTGTCAGTAGCTAAGTTGATTAGGTCTCATGATTGTCATCTAATCTTCAA TCTTAATTCTTGTGTCATTATGCAGAATACCACCAGGAAAGTGATTGGTACAGCTAGATTAGATCAAGGTCTATTTGTTATCAGTCATGTGCATAAGACG CTTTTTCAAGTATCTGTCTCCCACTCTACAAGTGTTAGTGAGTCTGACCTTTGGCACTTAAGGCTTGGACATGCTTCCTCATCCTCAATGAAGACTTTAT CTAGTCAATTTCCTAGTATTCCTTTCTGTAATAGACAAAATGTTGCTTGTGATGTTTGTCATGCTTTTAAACAAAAAAGATTGCCTTTCTGTAATAGCCC TACTCATACAAATAAAAGTTTCCAATTGCTGCATGTTGATATTTGGGGCCGTTACTCAACTGTTTCTGTTTATGGACATGTGTATTTCCTTACCATAGTT GATGACTTCACTAGGTTTACTTGGGTTATTATGATGAAAAACAGAAGTGAAACTAGGATACACATTACCAATTTTGTTACATTGATTGAGAATCAATTTA GTACCAAGGTTCAGAATATTAGGAGTGATAATGGACCCGAGTTTTTGATGAATGATTTCTACTCTTCTAAAGGAATCATTCATCAAAAATCTTGTGTCTA TACCCCTCAACAGAATGGGGTAGTGGAAACAAAACATCAGCACATTCTTAATGTTGTTAGGGCATATTCTTTCAATCTTCCATCACTCCTAACCTTTGGA ATTGTGCCATACAGCATGCTGTGCATATTATAAACAGACTTCCAAGTCCCTTGCTTAAAAATCACAGCCCATACCAACTTCTTTATGGTTGTTTACCAAC CTTAGATTCTCTAAAAGTCTTTGGTTGTTTGGCTTATGCTAGCACTATTGCAACAGGGATTGGTAAATTTGATCCTAGAGCAAGGAAATGTTTGTTCCTA GGTTACAAGGAAGGAATAAAAGGGTTCATACTTTATGATCTTACTTCTCATGAGTTCTTTATCTCTAGGGATGTTGTCTTCTATGAATTTTTTTTTTCCT CTGTCTTCTGTCACCAACAATTCTCATCTACCTTCTTTACTTAAGTCAAACACAACGCTTGAGTCAAACACAATTCCTTTTCTTAAGTCACACACAACTC TTGAGTCAAACACTATTCGTATTCTTGAGTCAAACACAAGTCTTGAGTCAATAACACATGAGACATATACTTCTTCTCCTTCTCCATCAATCACAACACC TACTACTCATGCTTCTCTGCCTAGACAATCAGACAGATTGAGAAGACCTCCTTCTCACTTACAAGACTATCATTGCACTTTTGCTCATGTTGCAACTCAT GATAATGTTTCTGACTCACATACTTGCACTAGCCACACTTGTGCTACTGATGTCATTGATCCTAGTTCTAACATCATTCATCCTACTTCAAGGACTCTTT ATCCCCTTTCATCTGTTCTTGACTACTCTAGATGCAGCAACACCTACAAGAGTTTTTGTTTAGCTGTGTCTAGTACCTCTGAAACTACCAATTATAAACA AGCTGCTCAAATAGATCATTGGCAGCAAGCTATGAATGCTGAGTTGTTAGCTTTGGCTCAGAATGAAACTTGGTCTCTTGTTCCTTTTCCTGAAGGAAAA ATTCCCATAGGGTGCAAATGGGTTTATAAGACTAAGGTTCATGCTGATGGAACTCTTGAAAGGCACAAGGCAAGGTTGGTTGCAAAG
• Tissue: pods
• Gene name: LI_gene_192569;
• Additional information: details;

Expression of Ll_transcript_348561

FPKM

• PAB: 0
• PNAB: 0.1
• PS1: 0.1
• PS2: 0.2
• PS3: 0.2
• PW1: 0
• PW2: 0.1
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_348561

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 29.41% of identity
• Blastx: Copia protein from Sophophora with 27.35% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434370.1)
• Pfam: GAG-pre-integrase domain (PF13976.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;