| Id Trinity | TRINITY_DN52425_c1_g2_i7 |
|---|---|
| Name Transcript | Ll_transcript_348535 |
| Sequence | ATAATGTAGAGATAAATTCAAATAATATATTGTATATTATTTGTATTTATTTTCACAATAATAATTACATTTATAAGATTTTTTATTTAAAAAATCACAC TTATATATAAAAATGAGGGGAATTTTCATATGCATAAAAAATAATGAATAATTTATGTAATAATTTTAGTGAAAGGGAGGGGTGCTAGTTTAATTTACTT TATTAAAAAATTATATCATAAACATGGTTTGAAATTAAAATATACAAACGAATGGGCATCGGTTCAAGTGTTACATGAGAGTTAGCCCCAATATACCTGT AGATGTTTCCCGCTCCGATAAGATTTTCTCTCTTACCAACCAAAATTAAAATATACACGCTAAACCAGATATATGCTCTGCTTTAATGGTATCATTGAAT GCGGACTAATCAAAGTTTGATTTTTTATTTTTGAAATGATTACAGAGTTTATTTCAGAGGAAGGAGAGATTTCTGAGCAAGTGATAATGAAGGCTTTCAA TGCAACGGAAGAGGAATTCTTCAATTTAGTGAAGCAATCATGGATTACTCTGCCACATATTGCTGCAGTGGGTTCATGTTGTCTTCTTGGGGTGATTTCA AATAACAATCTTTATGTTGCAAATCTTGGGGATTCAAGAGCAGTGCTGGGTAGAAAAGCATTGAGAAGTGAAGTAAATTGTGCTGCTGTAATGGCAGAGC GTTTGTCCACTGATCATAATGTTGGAGTGGAAGAGATCAGAAAGGAGGTTGAGGCTCTTCACCCTGATGATGCACACATTGTGGTTCACACTCGTGGTGT TTGGCGAATCAAGGGTATTATTCAGGTAACTTGTTATATTCAAGTTACCTGAATAGCTTCAGTGAAATTCTTCTTCTTCATCATTCTGAAGAGACATCTT TTTGAACCTGAATTAGTTGCATTTGCAAATTTGCAATATTAATTACTACTTTATCTCCTGCTTGTGAATTTACTATGTTTTTTGCTTTAAAATAAAGAGT TGTTTAACTGTGTTTCACTTCACAGGTCTCAAGATCGATTGGTGATGTTTATCTAAAGAAACCAGAGTTTGACAAAAATCCTCTATTCCAACATTTTGTA TGCCCATTCCCTTTAAAGAGACCTGTAATTACAACAGAACCGTCAATATTGACGCGGAAGTTGACAGCAGAGGATTTGTTTCTGATCTTTGCATCAGATG GACTTTGGGAGCATTTAACTGATGAAGCGGTTGTTGAAATCGTCTTCAGAAGTCCCAGAAAAGGAATAGCAAAACGGTTGGTGAGAGCTGCATTGGAAGA GGCTGCAAAGAAAAAAGAAATGAGATACGTGGATTTAAAGAGAATTGAGAAAGGTACAAGGCGAAAGTTCCATGATGATATTACAGTGATCGTTATATAC CTAGATCATTCACAAGGTTCTCTGAATAGTAGCCCAAAACATCAGGGTCATTGCATTAGTACTCCTGTAGATATATTCTCTGTGAATGCAGATGAAAATG ACCTATAAACTGCACAGCTACTAGTACTACGGTTGTTCATGAAAAATCTCTTTAATATAAGACCTTAACATTATGACATTCACATGTAAATAGATATAGA TTTAGGAATATTTGATTCCATTTGCTTTTCTGATTGATTTTCTTGTTGCGCTTCTGGTTGCTTTGTTCTCACCTCTCTGCCTTCCTTTTATGTGTTCCTT GATGATTAAGAACTACTTAGTTTCCTCCCTTCTCTCTATGACACTCAATTTTCCTTCTTTGTGTTTCTCTTTATGAGATAACAAAGTGAATCAGATGGAT GAATTTCCAATGCAAGAGTGCCTCTTTTATAGAAGGGTTTAGGAGGAGTTATCGGACGTTATAACTCCTCCACTATCACGGAAACCGCCCATGAAGTGAG AGGGAGGGAGTTTACAAACCCCCCACTAGTCTGATCCATTAATTGCCAACCATCATCACATTAGGCACTTTAATTCAAACTAGTAACTTCCAAGAACATG GACCAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_192604; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_348535
| Blastp | Probable protein phosphatase 2C 78 from Oryza sativa with 59.7% of identity |
|---|---|
| Blastx | Probable protein phosphatase 2C 78 from Oryza sativa with 62.96% of identity |
| Eggnog | Phosphatase(COG0631) |
| Kegg | Link to kegg annotations (4352638) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019444899.1) |
| Pfam | Protein phosphatase 2C (PF00481.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |