Id Trinity | TRINITY_DN52431_c0_g1_i12 |
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Name Transcript | Ll_transcript_349865 |
Sequence | CCAAAGCTGCTATTTCCTCAAAACAATTGGAAAAAAACATTTTCTTTTTCGGCGGTGGTGTAATTGAATCAAACCCAAACCACTCGATTCTCTGAAAACC CTAACAACAACTTTCCCCATCTTCGTATCACAACCCATGGAAATTCTATTCCTTTCTTAAACCCTAAATTCGAATCATCATTCCCATTCCTTAAATTCAA CGTTTCATTCTATTGGCTGCAATCACAACAGGAATGTCTCTCCCACCAGTACACTATCTATACGTCACAGATGATTCTCTTCGCGAATGGAAGAGTGGAA ACCCTAATCTCAAGATCTCAGAACCTGTTCCATTGCTTCGATTCCTCTACGAGCTATGCTGGACTATGGTTCGGGGTGAATTGCCGTTACAGAAGTGTAA AGTAGCATTAGACTCTGTGAGATTCTCAGAGAAAGCTTCCACTGTGAAATTGGCTTCAAATTTTGCAGATATAGTAACCCAGATGGCTCAAGATCATACT ATGTCAGGAGAGTTCCGCTCCCGTCTCATCAAACTGGCAAGATGGCTTGTGGAATCTGAATTGGTTCCAGTTAGGCTACTTCAAGAACGCTGTGAGGAGG AGTTTTTGGGGGATGCTGAGTTGATCAAAATAAAGGCTCAGGATTTGAAGGGAAAAGAGGTCAGAGTTAATACACGGCTTCTATATCAGCAAACCAAATT TAACCTTCTCAGAGAAGAGAGTGAGGGCTATGCAAAGCTGGTCACTCTTCTTTGCCGGGATTCTGAAGTTCCAACTCAAAAGGCATCTGCAGCAACAATT GGCATTATTAAGTCGTTAATTGGCCACTTTGATTTGGATCCAAATCGTGTTTTTGATATTGTTCTTGAGTGCTTTGAACTTCAGCCTGATAACGATTTGT TTTTGGACCTCATTCCTATTTTTCCGAAGTCTCATGCTTCACAGATTCTTGGATTTAAATTCCAATACTATCAGCGCATGGAAGTGAGCAATCCTGTTCC ATTTGGGCTCTATAAACTCACAGCCTTGCTGGTGAAGCAAGATTTTATTGATCTTGATAGCATATATGCACATCTACTTCCTGGGGATGATGAAGCTTTT GAGCATTATAACAGTTTCTCTTCCAAACGTCTTGATGAGGCTAACAAAATTGGAAAAATAAACCTTGCTGCTACTGGAAAAGATCTTATGGATGATGAGA AACCGGGCGATGTCACAATAGATCTCTTTGCTGCTTTAGACATGGAAACTGATGCAATTGAAGAACGAACGGCTGAGCTTGAAAACAGTCAAACTTTGGG CTTGCTTACTGGCTTTCTTTCAGTAGATGACTGGAGTCATGCACATACACTATTTGACCGCCTTGCACCACTTAATACAGTGGAACATAACCAAATATGT GGCAGTTTGTTTAGGCTTATTGAGAAGTCAATTTCACCAGCATATGATGCTATTCGTCAAGCACATCTTCAAAAGTCTGGGCCGTCGATAGGAGGTGGCA CTGATTCTATGGATGTAGATAACTCTTCGCGAAGTGGATCTTTCATTGATCTCCCAAAGGAACTTTTTCAGATGCTTGCTTGTGCTGGACCTTATCTCTA CCGTGATACTATGTTGTTGCAGAAGGTTTGTAGAGTATTGCGAGGTTATTATCTTTCTGCTCTTGAACTTGTAAGCGGTGGGGATGATGCTTTAAATCCT CATATGCACCTGAAGGACACAAGGCTAAGGGTGGAAGATGCTTTAGGAACATGTCTACTTCCTTCTCTGCAGCTGATTCCTGCCAATCCAGCCGTCGCCC ATGAAATTTGGGAACTTATGAGTCTCCTTCCGTACGAGGTGCGATATCGTTTATATGGTGAATGGGAAAGAGATGATGAGCGCTTTCCAATGCTCTTGGC TGCGAGACAAACTGCCAAGTTGGACACTAGACGTATTTTGAAACGACTGGCAAAAGAAAACTTGAAGCAGCTGGGTCGGATGGTTGCAAAATTAGCTCAT GCCAACCCTATGACAGTCCTTCGGACAATTGTTCATCAGATTGAGGCATACAGAGACATGATTACTCCTGTAGTGGATGCTTTTAAGTATTTAACTCAGC TTGAGTATGATATATTGGAATATGTTGTGATCGAGCGATTGGCACTTGGTGGACGTGATAAGTTAAAGGATGACGGTCTTAATTTGTCAGATTGGCTTCA ATCGCTAGCTTCATTTTGGGGTCACTTATATCCAGGACGCGTTGTATCAAATTCCAGGTTGCAGATCAACCTTAACGAATGCAGGATTGGCTTGCCAGTT GGTGGCATGCACATGCAGCTGTATGATGTGTGGTTACTGTTATTCACTGGCAGATTTTTTGGGATGGATTTTTGCCCTTTGTTGAAAGGGTTGCCACTTC TCTGTTGTCCTTTCAACATTTGAACTGCTATTAGCGCCATGTCCATATCCTTTTAAAAGGGATATTTAAAAAGTTGAAATCTTCCTGCAATAGCCACTGC AATGTTTACGGAGAATTATCTGATCTAAATGAAGTTTTGGACCTTCATCCTTCATACGTAGCATGAAAGGCCAGTGCACTTACCAGATACAATTAGTCAA TGAGAATGAATGAATGAGTACATAAGAAGTGCAAGGAAACTGACTGGAAGTCGTTGGGGTTTTATGAGGAATGATCCGTGTTCATACATTTCAATTATTT TTGGTCATTTCGAATGTCAATAATGAAGTGGCACCTTAATGGCATTTGTGGGGATAGTAGGGATACAGATCCGTGTATACTGTGAGTCTACCATTTTGTC CATGCTTATTTTGTGGTGTATCTAAAAAAATCGGGGAACAAATTCATATGCTGTTGGTCTTATAAAGAGGGTGGAGCCCTGAACTGTCTATTTTATGTGT TGGCTATGTGATTATTAATCCTCCTAATTAGGAAGATATGTATTATGCTTGTTGGCATGGGTGCTTAATCCTTGGTATTGGGCTGATGATGCGAAGGTTT TGGGTCTATCTGATGTGACCGCGGCTGATAGTAGCATTGTTGTAAACGGTCTACTCTATTAGCTATCAGTGTCCTCCTGTGATGCTAATGATGACTGCAA TATTCCAAAGAAATCGTTAGCTTTTCCTGAAGCTGTTTGCTGTCTATTTCTACTAACGGACCTAATGCAGTAGTATTGTTAGATAGTATACTCTTTCTTC AGATAAGAGAGCGGCAGCTTTTCGTTTGACTTTATCATCACTAGTTTGTTTGATCAACTATAGTTGAGGATGGGAGGATCATATGATTATATTGTCTGTG ACAATGAGTTGCCCACCCTCTGAGGAATGGATTACATAACAAGTTTTTCTAATATTTTACTGATGTGTATACTTCAAAAATGAAGAATGGCGTGCTTGTG CATGCCTTATTTTTTCCGAGCGTACCGGTCAAATCATGAACAACTTGGGGCCAATATTCTGCTAGGAATTTGTTTTTGCTTTGGAGGGATGGGGAATGAT ATACTTGGAGCAGTTTGGTGTAAAAAGTACCCATCAATGGAATTAAGGGGCCTTTTCCAGTATCTTGTAAATCAGTTGAAAAAGGGGCAAGGAATTGAAC TTGTTCTACTGCAGGAGCTCATTCAACAAATGGCAAATTTCCAGTACACTGAGAATTTGACCGAGGAACAACTGGACGCTATGGCAGGGAGTGAAACTCT CAGATATCAAGCAACTTCTTTTGGAGTAACTCGAAATAATAAGGCACTGATAAAGTCAACTAGCAGACTTAGAGATTCATTACTGCCAAAAGATGAACCG AAGTTGGCAGTTCCCCTCTTATTGCTTATTGCTCAGCATCGTTCTCTGGTTGTCATCAATGCAGATGCACCCTACATTAAGATGCTCAGTGAGCAGTTTG ATAGATGCCATGGAACTCTTCTTCAATATGTGGATTTTCTTTGCAGTGCTGTTTCACCAGCATCGAATTATGGTGTTCTTATTCCCTCACTCAACGACCT GGTCCATCTTTACCACATGGACCCAGAGGTTGCTTTCTTGATATATCGCCCTGTGATGAGGCTTTTCAAGTCTCAGAAGGCTCCTGATGTTTTCTGGCCC TTGGATGATAAAAATGCTGAAAGTGATGCTTCTATAAACACTGAGTCTGACCCTGCAGATCATTCTAGCAGTATGGTTCTAGATCTTGGTGCAGCTCAGA ATCCTATAAGTTGGTCATATCTTCTTGATACTGTTAAAACCATGTTACCTTCAAAAGCATGGAATAGCCTGTCTCCTGATCTTTATGCAACATTCTGGGG TCTCACATTATATGATCTGTATGTTCCAAAAAACCGTTACGAGTCTGAAATTTCCAAGCTGCATGCTAACCTCAAGTCTTTGGAGGAACTCACTGATAAT TCTAGCTCAGCAATCACCAAGAGGAAGAAAGAAAAGGAAAGAATTCAGGAATCTCTTGATCGACTGATTAATGAACTTCATAAACACGAAGAGCATGTTT CATCTGTTCGTAGACGCCTTTCCCATGAAAAAGATAAATGGTTAAGTTCCTGCCCTGATACCTTGAAGATCAACATGGAGTTTCTTCAGCGTTGTATCTT TCCACGCTGTACTTTCAGTATGCCTGATGCTGTATATTGTGCTATGTTTGTTCACACTCTTCATTCCATTGGAACCCCCTTTTTCAATACAGTCAACCAC ATAGATGTTTTGATTTGTAAGACCCTACAACCAATGATATGTTGTTGCACTGAGTATGAAGCAGGCAGACTCGGCAGGTTTCTGTATGAAACTTTAAAGA TTGCTTACTATTGGAAGAGGGATGAGTCTATTTATGAACGTGAGTGTGGAAACATGCCAGGCTTTGCTGTTTATTATAGATATCCAAACAGCCAGCGAGT TACGTATGGGCAGTTCATCAAGGTACACTGGAAGTGGATTCAAAGAATCACGCGGTTACTGATTCAGTGTTTGGAATCTAGCGAGTACATGGAAATTAGA AATGCTCTCATAATGTTGACAAAAATCTCCAGTGTTTTTCCTGTTACTCGTAAGAGTGGGATAAACCTTGAAAAGCGGGTAGCTAAGATTAAAACAGATG AAAGAGAAGATCTTAAGGTGTTAGCAACTGGTGTTGCAGCGGCATTGGCTGCTAGGAAGCCTTCTTGGGTTACCGATGAAGAGTTTGGTATGGGTTATCT CGAGCTGAAGCCTGCACCCTCTATGGCTAAATCTTTAGCTGGAAATTCAGTAGCTTTACAAAGTGGGACAGGTATTGGTGTTTCTCAATCGGAATCTTCC AGTGGAAAACATTTGGGCTCTGGAAACACTGTCAAGGGCCAGATAATAAGAACAAAAGCTGCAGACAGCAAGTCGGAAAGAAGTGAAAGCACTGCTGTGA CAAAATCTGAATCTGTTGTAGTAAAAACCAAGGGTAGTTCAATGGTGAATGGATTGGATGCTCAATCGTCATTACCATCGTCTACTGCACAAACGGGAGC ATCAAAATCTATGGAAAACCAAAAGCAAGTGGAAGAATCCATAAATAGAGCATCAGATGAACACGTGACAAGAGTTGCTGAGTCAAGAAATTCCACAAAA CGCTCAGGGCCTGCTGGCCCAGTTTCGAAGCCCTCAAAACATGATCCTTCAAAAGAGGATGGTAGATCTGGAAAAGCTGTTGCTAGAACTTCTGGATCGT CAATTGACAGGGATCTACAAACGCATGCATCTTCTTCAGTCAATGCTAATGGTAGCACCATTGCAGGTTCTATGAAAGGCTCAGCTCCATCACCGAAGAT GGACAGTCCTGGTAATGAATCGAAGGGAGAGGTTGCACCTGCTAAGTCTTCTGATGTTAGGGCTTCGATGGTTAAGGATGACAGAAATGATGTTGCTGAC TTGCCAAGAGGATCCT BLAST |
Tissue | pods |
Gene name | LI_gene_192654; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_349865
Blastp | THO complex subunit 2 from Arabidopsis with 67.99% of identity |
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Blastx | THO complex subunit 2 from Arabidopsis with 73.48% of identity |
Eggnog | tHO complex(ENOG410XQ2A) |
Kegg | Link to kegg annotations (AT1G24706) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019446194.1) |
Pfam | Transcription factor/nuclear export subunit protein 2 (PF11262.7) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |