Ll_transcript_349855

• Id Trinity: TRINITY_DN52431_c0_g1_i6
• Name Transcript: Ll_transcript_349855
• Sequence: CCAAAGCTGCTATTTCCTCAAAACAATTGGAAAAAAACATTTTCTTTTTCGGCGGTGGTGTAATTGAATCAAACCCAAACCACTCGATTCTCTGAAAACC CTAACAACAACTTTCCCCATCTTCGTATCACAACCCATGGAAATTCTATTCCTTTCTTAAACCCTAAATTCGAATCATCATTCCCATTCCTTAAATTCAA CGTTTCATTCTATTGGCTGCAATCACAACAGGAATGTCTCTCCCACCAGTACACTATCTATACGTCACAGATGATTCTCTTCGCGAATGGAAGAGTGGAA ACCCTAATCTCAAGATCTCAGAACCTGTTCCATTGCTTCGATTCCTCTACGAGCTATGCTGGACTATGGTTCGGGGTGAATTGCCGTTACAGAAGTGTAA AGTAGCATTAGACTCTGTGAGATTCTCAGAGAAAGCTTCCACTGTGAAATTGGCTTCAAATTTTGCAGATATAGTAACCCAGATGGCTCAAGATCATACT ATGTCAGGAGAGTTCCGCTCCCGTCTCATCAAACTGGCAAGATGGCTTGTGGAATCTGAATTGGTTCCAGTTAGGCTACTTCAAGAACGCTGTGAGGAGG AGTTTTTGGGGGATGCTGAGTTGATCAAAATAAAGGCTCAGGATTTGAAGGGAAAAGAGGTCAGAGTTAATACACGGCTTCTATATCAGCAAACCAAATT TAACCTTCTCAGAGAAGAGAGTGAGGGCTATGCAAAGCTGGTCACTCTTCTTTGCCGGGATTCTGAAGTTCCAACTCAAAAGGCATCTGCAGCAACAATT GGCATTATTAAGTCGTTAATTGGCCACTTTGATTTGGATCCAAATCGTGTTTTTGATATTGTTCTTGAGTGCTTTGAACTTCAGCCTGATAACGATTTGT TTTTGGACCTCATTCCTATTTTTCCGAAGTCTCATGCTTCACAGATTCTTGGATTTAAATTCCAATACTATCAGCGCATGGAAGTGAGCAATCCTGTTCC ATTTGGGCTCTATAAACTCACAGCCTTGCTGGTGAAGCAAGATTTTATTGATCTTGATAGCATATATGCACATCTACTTCCTGGGGATGATGAAGCTTTT GAGCATTATAACAGTTTCTCTTCCAAACGTCTTGATGAGGCTAACAAAATTGGAAAAATAAACCTTGCTGCTACTGGAAAAGATCTTATGGATGATGAGA AACCGGGCGATGTCACAATAGATCTCTTTGCTGCTTTAGACATGGAAACTGATGCAATTGAAGAACGAACGGCTGAGCTTGAAAACAGTCAAACTTTGGG CTTGCTTACTGGCTTTCTTTCAGTAGATGACTGGAGTCATGCACATACACTATTTGACCGCCTTGCACCACTTAATACAGTGGAACATAACCAAATATGT GGCAGTTTGTTTAGGCTTATTGAGAAGTCAATTTCACCAGCATATGATGCTATTCGTCAAGCACATCTTCAAAAGTCTGGGCCGTCGATAGGAGGTGGCA CTGATTCTATGGATGTAGATAACTCTTCGCGAAGTGGATCTTTCATTGATCTCCCAAAGGAACTTTTTCAGATGCTTGCTTGTGCTGGACCTTATCTCTA CCGTGATACTATGTTGTTGCAGAAGGTTTGTAGAGTATTGCGAGGTTATTATCTTTCTGCTCTTGAACTTGTAAGCGGTGGGGATGATGCTTTAAATCCT CATATGCACCTGAAGGACACAAGGCTAAGGGTGGAAGATGCTTTAGGAACATGTCTACTTCCTTCTCTGCAGCTGATTCCTGCCAATCCAGCCGTCGCCC ATGAAATTTGGGAACTTATGAGTCTCCTTCCGTACGAGGTGCGATATCGTTTATATGGTGAATGGGAAAGAGATGATGAGCGCTTTCCAATGCTCTTGGC TGCGAGACAAACTGCCAAGTTGGACACTAGACGTATTTTGAAACGACTGGCAAAAGAAAACTTGAAGCAGCTGGGTCGGATGGTTGCAAAATTAGCTCAT GCCAACCCTATGACAGTCCTTCGGACAATTGTTCATCAGATTGAGGCATACAGAGACATGATTACTCCTGTAGTGGATGCTTTTAAGTATTTAACTCAGC TTGAGTATGATATATTGGAATATGTTGTGATCGAGCGATTGGCACTTGGTGGACGTGATAAGTTAAAGGATGACGGTCTTAATTTGTCAGATTGGCTTCA ATCGCTAGCTTCATTTTGGGGTCACTTGTGTAAAAAGTACCCATCAATGGAATTAAGGGGCCTTTTCCAGTATCTTGTAAATCAGTTGAAAAAGGGGCAA GGAATTGAACTTGTTCTACTGCAGGAGCTCATTCAACAAATGGCAAATTTCCAGTACACTGAGAATTTGACCGAGGAACAACTGGACGCTATGGCAGGGA GTGAAACTCTCAGATATCAAGCAACTTCTTTTGGAGTAACTCGAAATAATAAGGCACTGATAAAGTCAACTAGCAGACTTAGAGATTCATTACTGCCAAA AGATGAACCGAAGTTGGCAGTTCCCCTCTTATTGCTTATTGCTCAGCATCGTTCTCTGGTTGTCATCAATGCAGATGCACCCTACATTAAGATGCTCAGT GAGCAGTTTGATAGATGCCATGGAACTCTTCTTCAATATGTGGATTTTCTTTGCAGTGCTGTTTCACCAGCATCGAATTATGGTGTTCTTATTCCCTCAC TCAACGACCTGGTCCATCTTTACCACATGGACCCAGAGGTTGCTTTCTTGATATATCGCCCTGTGATGAGGCTTTTCAAGTCTCAGAAGGCTCCTGATGT TTTCTGGCCCTTGGATGATAAAAATGCTGAAAGTGATGCTTCTATAAACACTGAGTCTGACCCTGCAGATCATTCTAGCAGTATGGTTCTAGATCTTGGT GCAGCTCAGAATCCTATAAGTTGGTCATATCTTCTTGATACTGTTAAAACCATGTTACCTTCAAAAGCATGGAATAGCCTGTCTCCTGATCTTTATGCAA CATTCTGGGGTCTCACATTATATGATCTGTATGTTCCAAAAAACCGTTACGAGTCTGAAATTTCCAAGCTGCATGCTAACCTCAAGTCTTTGGAGGAACT CACTGATAATTCTAGCTCAGCAATCACCAAGAGGAAGAAAGAAAAGGAAAGAATTCAGGAATCTCTTGATCGACTGATTAATGAACTTCATAAACACGAA GAGCATGTTTCATCTGTTCGTAGACGCCTTTCCCATGAAAAAGATAAATGGTTAAGTTCCTGCCCTGATACCTTGAAGATCAACATGGAGTTTCTTCAGC GTTGTATCTTTCCACGCTGTACTTTCAGTATGCCTGATGCTGTATATTGTGCTATGTTTGTTCACACTCTTCATTCCATTGGAACCCCCTTTTTCAATAC AGTCAACCACATAGATGTTTTGATTTGTAAGACCCTACAACCAATGATATGTTGTTGCACTGAGTATGAAGCAGGCAGACTCGGCAGGTTTCTGTATGAA ACTTTAAAGATTGCTTACTATTGGAAGAGGGATGAGTCTATTTATGAACGTGAGTGTGGAAACATGCCAGGCTTTGCTGTTTATTATAGATATCCAAACA GCCAGCGAGTTACGTATGGGCAGTTCATCAAGGTACACTGGAAGTGGATTCAAAGAATCACGCGGTTACTGATTCAGTGTTTGGAATCTAGCGAGTACAT GGAAATTAGAAATGCTCTCATAATGTTGACAAAAATCTCCAGTGTTTTTCCTGTTACTCGTAAGAGTGGGATAAACCTTGAAAAGCGGGTAGCTAAGATT AAAACAGATGAAAGAGAAGATCTTAAGGTGTTAGCAACTGGTGTTGCAGCGGCATTGGCTGCTAGGAAGCCTTCTTGGGTTACCGATGAAGAGTTTGGTA TGGGTTATCTCGAGCTGAAGCCTGCACCCTCTATGGCTAAATCTTTAGCTGGAAATTCAGTAGCTTTACAAAGTGGGACAGGTATTGGTGTTTCTCAATC GGAATCTTCCAGTGGAAAACATTTGGGCTCTGGAAACACTGTCAAGGGCCAGATAATAAGAACAAAAGCTGCAGACAGCAAGTCGGAAAGAAGTGAAAGC ACTGCTGTGACAAAATCTGAATCTGTTGTAGTAAAAACCAAGGGTAGTTCAATGGTGAATGGATTGGATGCTCAATCGTCATTACCATCGTCTACTGCAC AAACGGGAGCATCAAAATCTATGGAAAACCAAAAGCAAGTGGAAGAATCCATAAATAGAGCATCAGATGAACACGTGACAAGAGTTGCTGAGTCAAGAAA TTCCACAAAACGCTCAGGGCCTGCTGGCCCAGTTTCGAAGCCCTCAAAACATGATCCTTCAAAAGAGGATGGTAGATCTGGAAAAGCTGTTGCTAGAACT TCTGGATCGTCAATTGACAGGGATCTACAAACGCATGCATCTTCTTCAGTCAATGCTAATGGTAGCACCATTGCAGGTTCTATGAAAGGCTCAGCTCCAT CACCGAAGATGGACAGTCCTGGTAATGAATCGAAGGGAGAGGTTGCACCTGCTAAGTCTTCTGATGTTAGGGCTTCGATGGTTAAGGATGACAGAAATGA TGTTGCTGACTTGCCAAGAGGATCCT
• Tissue: pods
• Gene name: LI_gene_192654;
• Additional information: details;

Expression of Ll_transcript_349855

FPKM

• PAB: 0.5
• PNAB: 7.4
• PS1: 9.8
• PS2: 7.3
• PS3: 8.7
• PW1: 6.4
• PW2: 5.7
• PW3: 5.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_349855

• Blastp: THO complex subunit 2 from Arabidopsis with 70.89% of identity
• Blastx: THO complex subunit 2 from Arabidopsis with 70.62% of identity
• Eggnog: tHO complex(ENOG410XQ2A)
• Kegg: Link to kegg annotations (AT1G24706)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019446194.1)
• Pfam: THO complex subunit 2 N-terminus (PF16134.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;