Ll_transcript_349487

• Id Trinity: TRINITY_DN52438_c3_g1_i3
• Name Transcript: Ll_transcript_349487
• Sequence: AACGGTGTGTTTTACTTCACCTCAACATTCCCGTGGTTCAACTCTTCATTCTAAACATCGGTGCCCTAACTTTCTCTCTCTCACCTCGTTCTCGATCGCA ATCTCTGTATTCTCCAACTCCGATCAATATGTCTCGAAGATATGATAGCCGAACAACAATATTCTCCCCTGAAGGACGTCTTTACCAAGTGGAGTATGCA ATGGAAGCCATAGGTAATGCTGGAACTGCAATTGGCATCTTATCTAAAGATGGTGTTGTTCTGGTCGGCGAAAAGAAGGTCACATCCAAGTTGCTGCAGA CCTCAACTTCCACTGAGAAAATGTATAAGATCGATGATCATGTTGCATGTGCCGTGGCTGGGATTATGTCTGATGCCAACATCCTAATCAATACGGCTAG GGTCCAAGCCCAACGCTACACACTCGCATACCAAGAGCCTATGCCTGTTGAGCAATTGGTTCAATCTCTTTGTGATACTAAGCAAGGATACACACAATTC GGTGGTCTTCGGCCATTCGGAGTCTCATTCCTGTTCGCTGGATGGGACAAAAATTTCGGCTTCCAACTTTACATGAGTGACCCTAGTGGAAATTATGGTG GTTGGAAAGCTGCAGCTATCGGTGCAAACAATCAGGCAGCGCAGTCGATACTAAAACAGGATTACAAAGATGAGATCTCTCGGGAAGAAGCTGTTCAACT TGCATTGAAGGTACTGAGTAAAACTATGGACAGCACAAGTCTAACCTCAGATAAGCTTGAACTTGCAGAGGTTTTCCTTTCACCTTCCGGAAAAGTGAAG TATCAAGTTTGTCCCCCGGAGAACCTGACTAAGCTGTTGGTGAAGCATGGGGTGACCCAACCAGCAACAGAAACTGCTTAGCTTTGTTGTTCTTTGTCAT ATGAGGTTTGGTTATGCCTATGCAATGAATTTCTATGTTTGTTTGTTCATTTTGGAATACATTTATAAACAATCTATGTCTTGGTTATGCTAATGCCTTT TTATCTCATATACTTCTTTAATTTTCAGGACTTAGATATATGATATTTTGGGTCTCCTCACAATGTTTTGGTTTCTAACCTTTTTTCATTTCTTGTCCCT ATCTTTTTATTTTTTGGGTACCACCAAGGGTATCTCTCATCCTTTTGGGTAAGGAACTAATCTCTTTCGGGGTGTATGACTATCCCTTCCAAAAAATGTG TTTTCCCTGAATCGAACGTCTATTAGTTCAATTCAATAATGGATCTATTAAAAAGG
• Tissue: pods
• Gene name: LI_gene_192714;
• Additional information: details;

Expression of Ll_transcript_349487

FPKM

• PAB: 17.6
• PNAB: 41.2
• PS1: 44.5
• PS2: 28.9
• PS3: 39.9
• PW1: 26.6
• PW2: 24.1
• PW3: 17.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_349487

• Blastp: Proteasome subunit alpha type-4-A from Arabidopsis with 90.4% of identity
• Blastx: Proteasome subunit alpha type-4-A from Arabidopsis with 90.4% of identity
• Eggnog: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity)(COG0638)
• Kegg: Link to kegg annotations (AT3G22110)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019442592.1)
• Pfam: Proteasome subunit A N-terminal signature (PF10584.8)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;