| Id Trinity | TRINITY_DN52438_c3_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_349493 |
| Sequence | AACGGTGTGTTTTACTTCACCTCAACATTCCCGTGGTTCAACTCTTCATTCTAAACATCGGTGCCCTAACTTTCTCTCTCTCACCTCGTTCTCGATCGCA ATCTCTGTATTCTCCAACTCCGGGATACTTGATTCATTCCTCTCTATGTCTGTATTTGCTTGGAAATAAATCGCAGATCAATATGTCTCGAAGATATGAT AGCCGAACAACAATATTCTCCCCTGAAGGACGTCTTTACCAAGTGGAGTATGCAATGGAAGCCATAGGTAATGCTGGAACTGCAATTGGCATCTTATCTA AAGATGGTGTTGTTCTGGTCGGCGAAAAGAAGGTCACATCCAAGTTGCTGCAGACCTCAACTTCCACTGAGAAAATGTATAAGATCGATGATCATGTTGC ATGTGCCGTGGCTGGGATTATGTCTGATGCCAACATCCTAATCAATACGGCTAGGGTCCAAGCCCAACGCTACACACTCGCATACCAAGAGCCTATGCCT GTTGAGCAATTGGTTCAATCTCTTTGTGATACTAAGCAAGGATACACACAATTCGGTGGTCTTCGGCCATTCGGAGTCTCATTCCTGTTCGCTGGATGGG ACAAAAATTTCGGCTTCCAACTTTACATGAGTGACCCTAGTGGAAATTATGGTGGTTGGAAAGCTGCAGCTATCGGTGCAAACAATCAGGCAGCGCAGTC GATACTAAAACAGGATTACAAAGATGAGATCTCTCGGGAAGAAGCTGTTCAACTTGCATTGAAGGTACTGAGTAAAACTATGGACAGCACAAGTCTAACC TCAGATAAGCTTGAACTTGCAGAGGTTTTCCTTTCACCTTCCGGAAAAGTGAAGTATCAAGTTTGTCCCCCGGAGAACCTGACTAAGCTGTTGGTGAAGC ATGGGGTGACCCAACCAGCAACAGAAACTGCTTAGCTTTGTTGTTCTTTGTCATATGAGGTTTGGTTATGCCTATGCAATGAATTTCTATGTTTGTTTGT TCATTTTGGAATACATTTATAAACAATCTATGTCTTGGTTATGCTAATGCCTTTTTATCTCATATACTTCTTTAATTTTCAGGACTTAGATATATGATAT TTTGGGTCTCCTCACAATGTTTTGGTTTCTAACCTTTTTTCATTTCTTGTCCCTATCTTTTTATTTTTTGGGTACCACCAAGGGTATCTCTCATCCTTTT GGGTAAGGAACTAATCTCTTTCGGGGTGTATGACTATCCCTTCCAAAAAATGTGTTTTCCCTGAATCGAACGTCTATTAGTTCAATTCAATAATGGATCT ATTAAAAAGGâBLAST |
| Tissue | pods |
| Gene name | LI_gene_192714; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_349493
| Blastp | Proteasome subunit alpha type-4-A from Arabidopsis with 90.4% of identity |
|---|---|
| Blastx | Proteasome subunit alpha type-4-A from Arabidopsis with 90.4% of identity |
| Eggnog | The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity)(COG0638) |
| Kegg | Link to kegg annotations (AT3G22110) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428694.1) |
| Pfam | Proteasome subunit A N-terminal signature (PF10584.8) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |