Ll_transcript_350858

• Id Trinity: TRINITY_DN52439_c1_g1_i1
• Name Transcript: Ll_transcript_350858
• Sequence: CGGGAATGCGTTTGAACGTTACACAACAAATTATTAGAAAACACACCTTTCACATTTTCCTCCATAAATAACCGTCTCCGACCCTCTCCTTCCACGCGCC ACTCCCTCACGAAGTCGTTAACTCTACGGCGACGACCGTGCCGGCGAACGCCAGGACGACGTCGTTTGCCGCAACACAATAATTCTTATTATAATAAAAT TATTTGAAATAACGATTTTGTGTGGATCTGGTTCGAGAAGAAGGAAATGATGGGATCGAGGGGATTATTCGGGTGGTCCCCACCTCACATACAACCTCTC ACTCCGGTTTCGGAAGTTTCCGAACCACCGGAATCTCCCTCCCCGTACCTTGACCCCTCGGCGGAGACATCCGCCGCGCAGCCGGTGGAGGTTGAGGAGG AGATGGAGGAGCCTGAGGAAATGGAGCCTCCGCCGGCTGCTGTTCCTTTCTCAGGGCTGTTTGCGTGCTCTGATCGCTTCGATTGGTTCCTCATGTGTGT TGGCTCTGTTGCTGCCGCGGCTCATGGCACTGCTCTTGTTGTTTACTTGCACTATTTCGCGAAAATTATACATGTTCTGCGGATGGATGGTTCGCAGGAC CAGTTTCAACGCTTCGCCGAGCTTGCTTTAATCATTGTTTACATTGCTGCGGGAGTTTTTGTAGCTGGTTGGATTGAGGTTTCATGTTGGATTTTGACCG GGGAGCGACAGACTGCAGTCATCAGATCAAAATATGTTCAAGTATTACTCAACCAAGATATGAGTTTTTTTGATACTTATGGGAATAATGGAGACATAGT GAGTCAAGTACTGAGTGATGTGCTGCTTATTCAATCTGCCCTTAGTGAAAAAGTTGGAAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTC ATTGGACTTATCAATTGTTGGCAGATTGCTTTGATAACGTTAGCCACAGGCCCATTTATTGTTGCTGCTGGAGGAGTATCAAATATATTCCTCCACAGGC TTGCAGAGAATATTCAAGATGCATATGCTGAAGCAGCAAGCATTGCTGAACAGGCAGTTTCCTATATCAAGACACTGTATGCATTCACAAATGAAACATT GGCCAAGTATTCATATGCAACATCCCTGCAAGCTACTCTCAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACGTATGGACTT GCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGTTCTTGGTTATTCATGGAAAAGCACATGGTGGTGAAATTATAACAGCTCTCTTTGCTGTAA TTCTGAGTGGCTTGGGGTTGAATCAAGCAGCAACAAATTTCTACTCATTTGATCAAGGACGAATAGCTGCTTATAGACTATTTGAGATGATAAGCAGGTC ATCCTCCTCTGTTAATCAAGATGGCACTACCCCCGATTCTGTGCAAGGAAATATACAGTTTCGGAATGTTTATTTCAGTTATCCATCTCGTCCTGAAATC CCTATATTGAGTGAATTTTATCTTACTGTACCTGCTAAGAAGGCTGTGGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGG AGCGTTTCTATGATCCTACATTAGGTGAAGTCCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTGGAATGGTTGAGGAGCCAAATAGGACTAGTCAC TCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCATATGGGAGAGATGCCACCATGGATCAAATTGAAGAGGCCGCTAAAATAGCTCGT GCACATACATTTATCAGCTCGTTAGAGAAAGGTTATGACACGCAGGTTGGCAGGGCTGGTCTAGCCTTGAATGAAGAGCAGAAAATAAAACTTTCTATTG CGAGAGCTGTGCTTTTAAATCCATCTATCCTCCTGCTCGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGAGGCTCTGGATCT CCTTATGTTAGGGCGCTCAACAATAATAATTGCCAGAAGGCTTAGTCTTATAAGGAATGCTGATTATATAGCTGTTATGGAGGAAGGTCGACTTGTTGAA ATGGGTACTCATGATGAATTATTGACCCGGGATGGCTTATATGCAGAGCTTCTCCGACGTGAAGAGGCCGCAAAGCTTCCCAAAAGAATGCCTGCTCGTA ACTACAAGGATACTGCAGCTTTCCAAATTGAGAAAGAGTCTTCAGAAAGTCAGAACTTGAAAGAATCCTCATCCCCTAAATTGATGAAATCACCCTCTCT TCAAAAACTTTCTGCAGTATTTCAGCCTTCAGATGCCATCCTTAATTCACAAGAATCACCAAATGTTCAGAGCCCACCTCCTGAGAAGATGCCGGAAAAT TGTCAAACTTCGGATGCAGCAGATAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTACCCGAGTTACCGAAGATTGATGTTGAATCTA TATATCGGCAAACATCAAAAGGTTCTGACCCTGAATCCCCTGTTTCACCTCTTTTAACATCCGATCCTCAAAATGAACGTTCCCATTCACAGACTTTTAG CAGACCAGATAGTGGCTCTGATGATTTTTCAGTGAAAATGAGGGAAACAAAAAGTGCACAGCATCGAAAACAACCCTCACATTGGAGGTTGGCAGAGCTT AGTCTTGCAGAGTGGTTTTATGCTGTGTTAGGAAGCATAGGCGCTGCCATCTTTGGTTCTTTCAATCCCCTGCTTGCTTATGTTGTTGGCTTGGTAGTGA CAACTTACTATAGCATTGATGGAGCCCGCCACTTTAGAGGGGAGGTGGAGAAGTTGTGCTTGGTCATTGCTTGCATGGGCATTGTGACAGTTGTTGCCAA CTTTTTGCAGCATTTCTACTTCGGTATTATGGGGGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAACTGGTTGG TTTGATGAAGAAGAAAACAGTGCTGACAATTTATCAATTCGATTGGCCAATGATGCTACATTTGTGAGAGCTGCTTTTAGTAACCGGCTTTCCATATTTA TACAGGATAGTGCTGCAGTAGTTGTTGCTATTCTGATTGGTGTTTTGCTGCACTGGCGAATAGCACTTGTGGTTTTGGCAACACTTCCAATCCTCTGTGT TTGTGCGATTGCCCAGAAACTTTGGCTTGCTGGATTTTCGAGAGGCATACAGGAAATGCACAGGAAGGCATCTCTGGTTCTTGAAGACGCAGTCAGAAAT ATTTACACTGTTGTTGCATTTTGTGCTGGTAATAAGGTGATGGAGCTCTACAGGCTGCAACTAAATAAAATACTTACGCAGAGCTTTTTTCATGGGGTTG CCATCGGTTTTGGATTTGGCTTTTCACAGTTTCTACTTTTTGCTTGTAATGCCCTTCTACTTTGGTACACTGCATTATGTATTAAAAATAGGTATGTAAG TCCAACCACTGCACTGAAGGAGTACATGGTTTTCTCATTTGCTGCATTTGCACTTGTGGAGCCTTTTGGGTTGGCTCCTTACATACTTAAGCGACGTAAA TCTCTCATTTCAGTGTTTGAAATTATAGACCGCGTGCCTAAAATTGACCCTGATGATAACTCAGCATTGAAGCCGCCCAATGTATATGGAAGAATTGAGT TGAAAAATGTTGATTTTTGTTATCCTTCTCGTCCAGAAATGTTGGTGCTCAGCAATTTTACTCTAAAAGTCAGTAGAGGACAAACAGTTGCGGTTGTGGG AGTGTCAGGGTCGGGAAAGAGCACTATAATATCTTTGATTGAGAGATTTTATGATCCAGTTGCTGGCCAAGTTTTACTAGATGGGAGGGACTTAAAGCTA TATAATTTAAGATGGTTAAGGAGCCACCTTGGTCTGGTTCAGCAGGAACCTATTATTTTCTCGACAACCATAAGGGAAAATATCATATATGCCAGGCATA ATGCCAGTGAAGCTGAGATGAAAGAGGCTGCAAGAATAGCAAATGCGCATCATTTCATTAGCAGCTTGCCTCATGGTTATGATACTCATGTTGGGATGAG AGGCGTTGACTTAACTCCGGGACAAAAACAGAGGATTGCAATTGCAAGGGTAGTGCTGAAAAACGCACCTATCTTGTTGTTGGATGAAGCTAGTTCAGCA ATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACCCTAATAATGGGAAATAAGACCACTATTTTGATAGCACATAGGGCTGCAATGATGC GGAATGTGGACAACATAGTAGTTCTTAATGGAGGAAGGATAGTGGAGGAGGGGACCCATGATTCATTGGCGGCAAAGAATGGTCTGTATGTCCGTTTGAT GCAACCTCATTTTGGTAAGGCTTTGCGTCATCATCGGCTTGTTTAGGGCGGGAGAGTGTATCATGTTGGTAATTACAACTAATGTTCTGCTAGAGTTGAA TAACTGGTGGTTGCTGCACTTGATGGAATTACCATGGAATGAGAGATGGAGGTTTGTGTGTGGCAAGAATGGGAATGATGAAAGCTTGGGTTAGCACTCA GCACTGGTAGACATAGGAAGAGTATACTGTAGCAGGGATACATGTATAGGCTTTAAAGATAGGTATTCGGAATTTGGAATTTGGGTGGTTTGAAGATTTG GGGTGGATGGATATTCTTTTGGAGACAAACAATTTAGATGGTGTTGTCTCTATGGTATGTATATTGATATGTTATTCTAAAAGTGGAGGGTGGAATCAAC AGTAACTCTGCTGAATTGTGATCTTCCATTCAACTTCCTTTTCATTCTCCATGTCTCTAAGTGTGGATGAAATTATCTAATACCCGATTTTATTCCTCAT TTGTGAAAGTTGTAGAAAATTATGTGTATATAAATAGCTATAATTGGTATAGTTGAGAAGGCATTCCTTTTGATGCTTGAATTCATCCCATGATATAATA GATGCAAATTTACTTGCATATTTTGCTTCTGCAATTACATTCTTCGTTTTCTTATGTACATTATTGGAACATGTATCGCATTGCCTCATCATATTTTCAA ATATCAAGGACTTTAAAAGAGCCCGCTACCTTCCTGTACAAGGTGCAGGGTGATAGTTATCTTTAGGGCCATGACATGTTGCCATTATATAGAAGCAACT CTTCTAAACTTCTACATGATTCTAAACTGCAAAC
• Tissue: pods
• Gene name: LI_gene_192723;
• Additional information: details;

Expression of Ll_transcript_350858

FPKM

• PAB: 6.1
• PNAB: 2.3
• PS1: 3.9
• PS2: 1.8
• PS3: 2.1
• PW1: 4.3
• PW2: 4.7
• PW3: 2.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_350858

• Blastp: ABC transporter B family member 20 from Arabidopsis with 82.77% of identity
• Blastx: ABC transporter B family member 6 from Arabidopsis with 83.59% of identity
• Eggnog: (ABC) transporter(COG1132)
• Kegg: Link to kegg annotations (AT3G55320)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019427682.1)
• Pfam: ABC transporter transmembrane region (PF00664.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;