| Id Trinity | TRINITY_DN52440_c1_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_348828 |
| Sequence | ATGAAGGGTCTCAAGGTAAATTAGAGGTATCATGTGTTGTTTATAAAGTTGGTGAAAGTATGCAAGAACTGATAAAGTTGTGGAAGCAATATGAATCATC ACAATCTCACATGGAACAAAATGGTGAAAGTTCTAATTATGGTCCCACTCTGGAAATTAGGATACCGTCTGAGCATGTCACTGCTACGAACCGCCAAGTC AGAGGTGGCCAGCTTTGGGGGACTGATGTGTACACATATGACTCGGATCTTGTAGCTGTTCTCATGCATACAGGTTACTGTCGCCCAACAGCTTCTCCAC CCCCTACAGCGATACAAGAGTTGTGTGCAACCATTCGGATGCTACCTCCACAAGATTGCTATATTTCTACACTGAGAAACAATGTACGTTCCCGTGCTTG GGGGGCAGCAATTGGTTGTAGTTATCGAATTGAGAAGTGTTGCATTGTGAAGAAAGGAGGTGGGACTATTGATCTTGAGCCTTGCCTTACACATACATCA ACTGTTGAGCCAACCCTTGCTCCAGTGGCTGTTGAGCGGACAATCACTACCAGGGCTACAGCTTCGGAGTAAGGCTGCATACATCTACCCTCTCCAGGCC CCACTAAGTGGAAGTCTCGTGCACTAAGTCACCCTTTTTATTTCTATATAAAGAAAAGTATTATTAAAAACAATTGTATTTGAGAAGATTTTATGTTTTG GCATTGGTAAATTTTCGGAATTGTATTGCTAGCTTTAGCTAGAAAGATTTAGTCTTTACCATCTGACGCTGCAGCTGTTAATTTTTCTAGAATGCATCGA GACAGCAACGATTTGTTCGAGAAGTCACGATACAGTACAACCTCTGCAATGAACCTTGGATCAAATATAGCATAAGCGTTGTTGCTGACAAGGGTCTTAA GAAGCCACTCTACACATCTGCTCGTTTGAAGAAGGGAGAAGTTTTGTATTTGGAGACACATGTGTGCAGGTATGAGCTTTGTTTTATTGGAGAGAAGATG GTCAAGGCTACACCAGCAACTCAGTTGCATGATACAAGTGCAGAAAAGTCTCAAAATCACCACCCACATTCTGCAAATGGTGGAAAAAATGATTGTGATG ATGTCATGATTGACGCATTCCGGTGGTCTCGTTGTAAGAAGCCTCTACCCCAGAAAGTGATGCGTACAATTGGCATCCCTCTGCCTCTTGAACATGTCGA GGTGCTGGAGGAAAATTTGGACTGGGAAGATGTACAATGGTCCCAAACTGGTGTTTGGATTGCAGGGAAGGAATATACCCTTGCACGAGTTCATTTCTTG TCAATGAATTAGTTTCCATTTTTTATGAGCTTGTGAATGATTTAGTTTATTACCCCTCATATGTTCTCCCCTCTTTTTTAGGAGGGGTCTTGGGGTGATA TAATGTGTTTATTTATATACTTATTTTAACACAATATTATCTTTTCACAATAATTAGAACTCAACTTCTTGTATTTTATGGGAATAGGTATTGGTCTTCT ACAAATATGCTTTACACCATGCATTTCTTTCTAGTAACCCTTACCTGTAAATAACATTAGAGAAATTGTGAATGGCTGGTAAATGAGGAAATTGC BLAST |
| Tissue | pods |
| Gene name | LI_gene_192735; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_348828
| Blastp | Transcriptional regulatory protein rxt3 from Schizosaccharomyces with 32.95% of identity |
|---|---|
| Blastx | - |
| Eggnog | - |
| Kegg | Link to kegg annotations (SPCC1259.07) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428368.1) |
| Pfam | Histone deacetylation protein Rxt3 (PF08642.9) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |