| Id Trinity | TRINITY_DN52449_c1_g2_i5 |
|---|---|
| Name Transcript | Ll_transcript_348711 |
| Sequence | GTGGTGGATATAAGGGTGCCGATGACGAAGTACATGGTGGGGATTCAGAAGGGTATTGTGGAGGTTATGGATGCATGTTTGAAGGAGATGAGGAAGACGA ATAAGGTTGACGTGGAGGATCTGACGGTGGAGAATGGTTTGTTCAAGTCGTTTGATGAGATTGTGAAGAGGCAGTTGGATCCAATTTGGCATACTCTGGG TAAGAAGACTAAGCAGCTCGTGTCGGACCTTAGGACCCTGAGAAAATTGTTGGATTATCTTGTCAGGAGTTGATGGTGCTTCATCAACAAATTCAAATGC TGGCTTAGTCTTGGAGGAAGTCTTGGAAGAAGCACCAAAGTGGAAGGTCTTACGTGTGAGTCAGAGGTTCTTGAGGAGGTAGAAGAAGAAAGACAAAAGC AAGGTGCATTGAGAGAAGAAGTGTTGGCTGAAGGTGAAGACACTGACAATGGCATTGTATTGGTTGCATGCAAAGATGAACGGTCGTGTTTTCAACTTGA AGAATGCATCACAAACAGTCCAAAAAAGGTCATGAGTGAAGAATGGAAGAAGTACTTGCTAAGCAAAGTACAGCTGCGTGACATAGTGCATAATAAGAAG AATAAGCCAAAGGATCCCAAAGGTTTTGGGATCCTTGATGGAGTGACTCCCATAACACCCGCTCAAAATGCAGATACCAGCAGCATTAGTAAGCAGGAGC ATGATGCACTTCTGGCAGCAGCATCGGGACTAAAAGATTTTGCTAAAAATGATCATGTTGAAGATCCCTCTCTGCCTGATTTTGGTGGACGGGGTCGTGG AAAAGGAAAGAGAAAAATAGGGAGTAAAAATGGTCCTATCGTCGTTGATGGATCTGGAGTCCAGAACAGTAATAAAAAGGCATCAACAAGTGATAAATTT GGGAAATGTGATTCAAAAAATGAAGCCCACGTAGATGAAGCTAGTCCTGCCAGTTCTGGTAGATTTCATGAAATCATGCATGGTGGGACATCTGTAGACA ACATAGTTCTTCGAAAACATACTAATACTGATGCTGCAGCTTTAAATGCGAAGCCACTACCTCCAGTACATTTTTATGCCATAGAAAGTGATCAGCCTAT ATTGGACATATTAAAGCCCTCTATTATCATTGTTTACCATCCTGACATGGCTTTTGTTAGGGAAATTGAAGTCTACAAAGCTGATAACCCCTCAAAAAGA TTGAAGGTATATTTTCTTTTCTATGAAGATTCTACTGAGGTTCAGAAGTTTGAGGCAAGTATACGTAGAGAAAATGGAGCATTTGAATCTTTGATTAGGC AAAAGTCTATGATGATGATTCCAGTTGACCAGAGTGGGCATTCTACTTTAGAGTCAGATTTAAATACTCCTCAAAACTCAATAACCAGAAAAGCTGGTGG GAGAAAAGAGGCTAATAAAGAAATGCAGGTCATTGTGGACATGCGGGAGTTCATGAGCAGCCTCCCAAATGTTCTACATCAAAAGGGAATGCACATCATT CCTGTGACCTTAGAAGTCGGCGACTATATCCTATCACCATTAATTTGCGTGGAAAGAAAAAGTATTCAAGATCTCTTTATGAGCTTCACTTCAGGTCGTC TGTATCACCAGGTGGAGACAATGGTGCGATATTATAGGATACCTGTACTCTTGATTGAGTTTTCACAGGACAAGAGCTTTTCATTCCAGTCTGCTAGTGA TATTGGTGATGATGTGACACCAAATAGCATTATATCGAAGTTGTCCTTACTTGCCCTACACTTTCCTCGGCTAAGAATAATCTGGTCTCGGAGTTTGCAT GCTACTGCTGAAATATTTGCTTCTCTGAAGGCAAATCAAGATGAACCAGATGAAACAAAAGCAATGAGAGTGGGTGTCCCCTCAGAAGAAGGGGTCGTGG AAAATGATGTGAGGTAAGTGCTTTTTCATAGTTTAAACTTGAAAGGTGTTTCCAGCAATGATGTGAAACCATATTAAAGAAGTTGAATGCTTGGTGTCTT GCATATAATTTATTGTAATGGTATGAAACAGTAACGAGTTGTTTTCTCATAGTCTCAGTGATATTAATTTTTGACATTTCTAATGGAAAATATTGATTTG TGGGCTTATTTGTTTAGGCACTTCTTACATAAAATTAGAATAGCTACTACTACATTTGTAGCATTGCCAGGTCACAAACATGAAACTTCCTTTGCCTATT AATATACAAGGGCTTCATGCCTCTACACATTAGCACATAAAATGTTAGAACTCGGGCTCAGACTCAGTCTTTCGTATCAAATTGTTTCATCAATGAATTT GTATGCACTGATTGTTTTTATTCATTTAGCATACTAATTTGTATATATACTCGTTGAGCCACAGAGCTGAAAATTACAACACATGGGCTGTGGAGTTTCT TAGGAGACTTCCTGGTGTTACAGATTCAAACTACAGAACCATAATGGATGGGTGTAAGAGCTTGGCAGAACTTGCTCTTCTTCCTGTGGAGAAGCTTGCA GAATTAATGGGGGGTCATAAAGCTGCTCGGACTCTAAGAGATTTTCTTGATGCTAAATATCCAACTTTATTATGAGGCTAATTGGGGTATATACAAAATA TACAACTTATTACTGTCGTCTATTAAGTGCCTTCCATTTGGTGGAAAACGGGTCAGCGAATTACTGATTATGTTTCTCACTCATGTTCATTATTACTATA GTTTTAACAGTATTGTAAATTTGTAATACTTAATTATTTCTGTTCTAAATATGTATCCTCAAATTCAAATTTTATTTAAATTTCAAAGCATCATTTAACA CTAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_192799; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_348711
| Blastp | DNA repair endonuclease UVH1 from Arabidopsis with 62.92% of identity |
|---|---|
| Blastx | DNA repair endonuclease UVH1 from Arabidopsis with 57.61% of identity |
| Eggnog | Excision repair cross-complementing rodent repair deficiency, complementation group 4(COG1948) |
| Kegg | Link to kegg annotations (AT5G41150) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_004511740.1) |
| Pfam | ERCC4 domain (PF02732.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |