Ll_transcript_348716

• Id Trinity: TRINITY_DN52449_c1_g2_i7
• Name Transcript: Ll_transcript_348716
• Sequence: GTGGTGGATATAAGGGTGCCGATGACGAAGTACATGGTGGGGATTCAGAAGGGTATTGTGGAGGTTATGGATGCATGTTTGAAGGAGATGAGGAAGACGA ATAAGGTTGACGTGGAGGATCTGACGGTGGAGAATGGTTTGTTCAAGTCGTTTGATGAGATTGTGAAGAGGCAGTTGGATCCAATTTGGCATACTCTGGG TAAGAAGACTAAGCAGCTCGTGTCGGACCTTAGGACCCTGAGAAAATTGTTGGATTATCTTGTCAGGAGTTGATGGTGCTTCATCAACAAATTCAAATGC TGGCTTAGTCTTGGAGGAAGTCTTGGAAGAAGCACCAAAGTGGAAGGTCTTACGTGTGAGTCAGAGGTTCTTGAGGAGGTAGAAGAAGAAAGACAAAAGC AAGGTGCATTGAGAGAAGAAGTGTTGGCTGAAGGTGAAGACACTGACAATGGCATTGTATTGGTTGCATGCAAAGATGAACGGTCGTGTTTTCAACTTGA AGAATGCATCACAAACAGTCCAAAAAAGGTCATGAGTGAAGAATGGAAGAAGTACTTGCTAAGCAAAGTACAGCTGCGTGACATAGTGCATAATAAGAAG AATAAGCCAAAGGATCCCAAAGGTTTTGGGATCCTTGATGGAGTGACTCCCATAACACCCGCTCAAAATGCAGATACCAGCAGCATTAGTAAGCAGGAGC ATGATGCACTTCTGGCAGCAGCATCGGGACTAAAAGATTTTGCTAAAAATGATCATGTTGAAGATCCCTCTCTGCCTGATTTTGGTGGACGGGGTCGTGG AAAAGGAAAGAGAAAAATAGGGAGTAAAAATGGTCCTATCGTCGTTGATGGATCTGGAGTCCAGAACAGTAATAAAAAGGCATCAACAAGTGATAAATTT GGGAAATGTGATTCAAAAAATGAAGCCCACGTAGATGAAGCTAGTCCTGCCAGTTCTGGTAGATTTCATGAAATCATGCATGGTGGGACATCTGTAGACA ACATAGTTCTTCGAAAACATACTAATACTGATGCTGCAGCTTTAAATGCGAAGCCACTACCTCCAGTACATTTTTATGCCATAGAAAGTGATCAGCCTAT ATTGGACATATTAAAGCCCTCTATTATCATTGTTTACCATCCTGACATGGCTTTTGTTAGGGAAATTGAAGTCTACAAAGCTGATAACCCCTCAAAAAGA TTGAAGGTATATTTTCTTTTCTATGAAGATTCTACTGAGGTTCAGAAGTTTGAGGCAAGTATACGTAGAGAAAATGGAGCATTTGAATCTTTGATTAGGC AAAAGTCTATGATGATGATTCCAGTTGACCAGAGTGGGCATTCTACTTTAGAGTCAGATTTAAATACTCCTCAAAACTCAATAACCAGAAAAGCTGGTGG GAGAAAAGAGGCTAATAAAGAAATGCAGGTCATTGTGGACATGCGGGAGTTCATGAGCAGCCTCCCAAATGTTCTACATCAAAAGGGAATGCACATCATT CCTGTGACCTTAGAAGTCGGCGACTATATCCTATCACCATTAATTTGCGTGGAAAGAAAAAGTATTCAAGATCTCTTTATGAGCTTCACTTCAGGTCGTC TGTATCACCAGGTGGAGACAATGGTGCGATATTATAGGATACCTGTACTCTTGATTGAGTTTTCACAGGACAAGAGCTTTTCATTCCAGTCTGCTAGTGA TATTGGTGATGATGTGACACCAAATAGCATTATATCGAAGTTGTCCTTACTTGCCCTACACTTTCCTCGGCTAAGAATAATCTGGTCTCGGAGTTTGCAT GCTACTGCTGAAATATTTGCTTCTCTGAAGGCAAATCAAGATGAACCAGATGAAACAAAAGCAATGAGAGTGGGTGTCCCCTCAGAAGAAGGGGTCGTGG AAAATGATGTGAGAGCTGAAAATTACAACACATGGGCTGTGGAGTTTCTTAGGAGACTTCCTGGTGTTACAGATTCAAACTACAGAACCATAATGGATGG GTGTAAGAGCTTGGCAGAACTTGCTCTTCTTCCTGTGGAGAAGCTTGCAGAATTAATGGGGGGTCATAAAGCTGCTCGGACTCTAAGAGATTTTCTTGAT GCTAAATATCCAACTTTATTATGAGGCTAATTGGGGTATATACAAAATATACAACTTATTACTGTCGTCTATTAAGTGCCTTCCATTTGGTGGAAAACGG GTCAGCGAATTACTGATTATGTTTCTCACTCATGTTCATTATTACTATAGTTTTAACAGTATTGTAAATTTGTAATACTTAATTATTTCTGTTCTAAATA TGTATCCTCAAATTCAAATTTTATTTAAATTTCAAAGCATCATTTAACACTAAA
• Tissue: pods
• Gene name: LI_gene_192799;
• Additional information: details;

Expression of Ll_transcript_348716

FPKM

• PAB: 0.4
• PNAB: 1.2
• PS1: 1.1
• PS2: 0.5
• PS3: 0.8
• PW1: 0.2
• PW2: 0
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_348716

• Blastp: DNA repair endonuclease UVH1 from Arabidopsis with 65.43% of identity
• Blastx: DNA repair endonuclease UVH1 from Arabidopsis with 59.82% of identity
• Eggnog: Excision repair cross-complementing rodent repair deficiency, complementation group 4(COG1948)
• Kegg: Link to kegg annotations (AT5G41150)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_004511740.1)
• Pfam: ERCC4 domain (PF02732.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;