| Id Trinity | TRINITY_DN52453_c0_g1_i17 |
|---|---|
| Name Transcript | Ll_transcript_351162 |
| Sequence | ATAACATACACATTTCTTTCTTTCTTCTTCCATCTTCATCTTCAGAATCACAATAACCACTTTTACACTCAGTTTTAAGGATTAAAATGCAATTATAAAT GTAAATAGAAGTATATAATTGTCTTTTTTGTTTTGCTTCCTGCCTTGTTTTAATGCGACTCTTATTTTCTTAGTAAAGAATTCTATGAATAGGTAACATA AGATACAGGGTCCTTATTAGGATTGTCATTGAATAAATATTTTTTGGTTGAGTACATTTTTTCCCCATTATTTTTACTAGTTTTTATTCAATGAATGATA ACAACCATTGACATGTTGTGAGGAAAGAAATGGTTGAAATGTGTTTGGCAAGAATAAAATTAGAATAGAAGCCAACGTGTGGCTTTGTTGACCTCAGAGT CCTATATGCCAAACCAAACACACCGCGTTTACTGCTACTAATGTGTTATGTGTTTTCTTCCATCCATCACACAGACACCAAAAACAACATCATTAATCTT GTTTTCGTTTATCAACCCATATAACTACCTTGTTTTTCTTCTATATTACATTTATTCATTCATTCCAATCACTGTGTTTTCTAGCTGCAGCATAATAAGC TTCCTTGTTTCTCCAAAGGATGATTTTTTCAAGGATTGGGTCTTCCCTCTCGCGTTCTTCTCGCGCCAGAAATTTGTTGCAGGGGAATGGGAAATTCGGA ACCCTAGTCGGAGCGCCGCGTATGAATGGTACCTCCTATTCCGACGGAGGAGAAAAGGGATTAGGTTTTTTGAGGGGTTACATAGCTCCGGCCAGCAATG GCTTCAATTTCAATTTCTCCGATTTTAAGTCAATTGGAGAAAGTACTAGGCTTCTTCGATTGTTTTCCAGTGAAGCTCCTAAGAAAAAGAGTTATGAAAA CTTTTTCCCCAAGGAAAAGAAGGAAATTCCTAAGAGAGACGATTCAAAACAGGAATCTAAAGATGACTCGAAGAAAAAGACAGGTGACCGTGAAAAGTTT GAAGAGTTTTTCATGAAGCATTTTCCAAGCATAGTACCTTTATTGGCCCTGATGACATTTTTTACCCTTTCACATGGTCTTCCCGAACAACAACAGATCA GCTTTCAGGAGTTTAAAAATAAGCTTTTGGAACCAGGCTTAGTAGATCATATCGTTGTTTCAAATAAGTCAGTTGCCAAAGTATATGTAAGGAGCTCTCA TCGTAACCTAGCAGACAGCGAAGTTGTCCAAGAGACTCTCCCTGGAGAAAGAAGTGGTGGCCAATATATGTATTATTTCAATATTGGAAGTGTTGAGTCT TTTGAAGAGAAGTTAGAGGAAGCGCAAGAAGCTCTAGGCATTGATCCTCATGATTATGTTCCTGTTACATATTCTTCTGAAATGTTTTGGTTCCAGGAAT TCTGGAGATTTATTCCTACATTGATATTTTTGGGAACTGTTCTCTATATGGGAAGGAAAATGCAAGGCGGGCTTGGCGTTGGTGGTCCTAGTGGCGGTAA GAGTGGTAGTGGCATATTCAATATAGGAAAAGCCCATGTTACCAAAGTAGACAAAAATGCCAAAAACAAGGTTGCCATATTTCTTTTATAAATAAGATGG TAGTTGCTTTTGTATTCAACTCTTGACAGTATATTCTCCAATTGCCTTTGTTATTGTTCATTTTAATATTTTTTTAGTGGAGGGAGTAGGAGTGGTGGTA TATAACTTGGCCACAAGTTCATTTAAGAGATGATGTTTCGTATAAATTTGTATTTGTTCAGGTTTTTTTCAAAGATGTTGCTGGCTGTGATGAGGCAAAG CAAGAAATTATGGAGTTTGTCCACTTCCTCAAGAGCCCAAAGAAATATGAAGAACTTGGTGCAAAAATTCCAAAAGGTGCACTTTTGGTGGGTCCTCCTG GCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGGGAATCTGGTGTCCCCTTTCTTTCTATATCTGGTTCTGATTTCATGGAAATGTTTGTTGGTGT TGGACCATCCAGGGTTAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCTCCCAGTATAATATTTATTGATGAGATTGATGCAATTGGTCGAGCAAGGGGA CGTGGAGGTCTCTCTGGTTCAAATGATGAGCGCGAAAGTACGTTGAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACCACTGCTGGGGTTGTTGTAC TTGCAGGAACAAATAGACCCGATATCTTAGACAAAGCTCTATTAAGGCCTGGGCGATTTGATCGCCAAATATCCATTGATAAGCCTGATGTTAAAGGCCG TGAGCAGATATTTCAGGTCTACTTGAAAAAGATCAAACTTGACCACAAACCTTCATATTTTTCACAAAGGCTTGCGGCGCTTACTCCGGGATTTGCTGGT GCAGACATTGCTAATGTTTGTAATGAAGCTGCCTTGATCGCTGCAAGAGGTGAGCAAAAACAAGTGACAATGGAACATTTCGAGGCAGCTATTGATAGGA TCATTGGTGGTCTGGAGAAGAGGAACAAGGTAAGTCTTTTACGCTTTTACTTCTTACTTTACCAGTAGCAAGGTTTGGCGAAAGGGTGACGGAGGGGGCT GGGTGTACTTCATAAAAGTCCTGCATATCATAGGGATGGTTAAAATTCTTTCTTCGTTTTTCTCATATTCTTTCCCATCATCAGGATGGAAGTGAAATGT AGTTCTAGCATAAATAAGATATTGACTAATTGTTTTTACAAATGAATGATTGAGAATGATAATGTTTGCTTCTGTTCATAACTCATAAGTTACAGTGGGA TATGCATAGAAAGATGAGGATACGGGGAAGTTTGTGGGGATTCATTTATGGAAAAATATTTATGTTATTAATTTAATTATACCTTTTCATATAAAATGTT ATATCCCTGACTTAATAGGTTTTCTTACCTTCTGAATAATAGATTTCAAAGATTTATCCTGCTAAAGTTGGTCTTGATAGGAAAGGTTATTGTATGCTAA AGCTTCCCTCTACGGTGTCTTTCATTTTATGTGTCATAGATTTCTGCATTGTATTCTGCCAGCATCATTTGATTATTATGTGTTGATCTTAGGCTATGGT CAGAATTTAAACTTCAATTGACTATGGTTAAAATTACATGCTACAATGAATTGAATATGTTGTACTACTTTGGAACTCTCTCTTCTTTATGACTTGGCAC TTGGTTAGTTAGAGTTTCTCTAATACCTTTGTTTCTCAACCAGATAATAAGCAAGCTTGAAAGGCGTACTGTTGCTTATCATGAATCAGGCCATGCTGTT GCTGGCTGGTTCTTGGAACATGCCGAACCTTTATTGAAAGTAACCATAGTTCCTCGTGGCACAGCAGCTCTTGGATTTGCCCAGTATGTTCCAAATGAGA ACCTTCTCATGACAAAGGAGCAGCTTTTTGACATGACTTGCATGACTCTTGGTGGCCGGGCTGCTGAGCAGGTAATTCCAACATATCGTTTAGTGTTTAC GCATTTTTATTATCCTCCTCTTTTGCCCTTTAATTCTTTCTTGTGTGACTTGTTGGAAGTCCCACATCACGTGCCTCACTTTATTGGGTGTGGTTTATGT ACCTATATTACACTCAATGCTAATTGGTTTTGAAATGGAATGTAACATGACTAATGCCGATGTTTCTATTAAAGGAATTAATTATTCGTTTTATTACTTA TAGATTATTTAGTTGCAAATTGTTTCACAAACCCATGAAAATGGTTTTCTTGACTTCTTATTCCAGGTTCTCATTGGGAGAATCTCAACTGGAGCTCAAA ATGACTTGGAAAAGGTGACCAAAATGACATATGCGCAAGTTGCGGTCTATGGTTTCAGTGACAAAGTGGGCCTTCTCTCTTTCCCACAACGAGAGGACTC ATTTGAGATGTCGAAACCATACAGTAGCAAGACTGCTGCAATCATCGATAATGAAGCACGCGAATGGGTAGGCAAAGCGTATGAGAGAACAATACATCTC ATCGAGGAACACAAGGAACAAGTGACTAAAATTGCAGAGTTGCTTCTTGAAAAAGAGGTGCTTCACCAAGATGACATGGTTCGAGTTTTGGGTGAACGGC CATTCAAGTCTACCGAACCCACCAATTATGATAGATTTAAGCAAGGCTTTCAGGAGGAGGAAAAGATAATAGAAAGACCTGCCAATGATCCTGAGGACAG TGGTGGATCTTCGCCTTTAGATCCTCAGGTTGTTCCCACATAGTATTTATGTTTGTTATCTAACACGAATTTGTTGTTTTTCATCTCCTGATATGGGCAA AGCTTGTATACACTCTTAACTGCTAAATAAAAAGATAATTTATTTTCAAATTTTCTGTTATTGATATGCTACAAATCAGCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_192829; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_351162
| Blastp | ATP-dependent zinc metalloprotease FTSH 8, mitochondrial from Oryza sativa with 91.7% of identity |
|---|---|
| Blastx | ATP-dependent zinc metalloprotease FTSH 8, mitochondrial from Oryza sativa with 92.03% of identity |
| Eggnog | Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity)(COG0465) |
| Kegg | Link to kegg annotations (4339002) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448616.1) |
| Pfam | ATPase family associated with various cellular activities (AAA) (PF00004.28) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |