Ll_transcript_351152

• Id Trinity: TRINITY_DN52453_c0_g1_i8
• Name Transcript: Ll_transcript_351152
• Sequence: CCGAACCAAAGAAAGCGTTAAACCCCCGCACTTGCTACGAGTAACGTGCCACGTGTTTTCTCCATTCGATTGAACAAACAACATTGATATTTTAGTATTA TCATCATCGTTTCGTTTATCAGGCCGCCATATAATAACGTTTCTTCCCATTCATACTTTAGATCTATTCATTCAATCCACTGTTTTGTTTTGTTGGAATT AAATTTCATTTTCAGATAAGGTTATTACTGTGTTTCTCCGAACTATGATTTTTTCAAGAATTGGCCGATCCCTCTCTCGTTCTTCTCGCGCTAAAAATTT GTTGCAGGGCGATGGAAGATTCGGAACCCTAGTTGGAGCTCCGCGTACTAATGGTGAATCCTTTTCTAACGGAGGAGGATTTTTGAGGGGTTACATAGCT CCTGCCAACAATTGCTTCGATTCCAATTTGTCTGATTTTAAGTCTATTGGACCAAACCCTAGGCTCATTCGCTTGTTTTCCAGTGAATCCCCTAAGAAAA AGAATTATGAGAACTTCTACCCTAAAGAAAAGAAGGAAGTTCCGAAGGGAGACGATTCAAAACAGGAATCTAAAGATGACTCAAATACAAAGACAGACGA TAATGAAAATTTGAAAGATTTTTTCATGAAGCAATTTCAAAACATATTACCTTTATTGGTGTTGGGGGTATTTCTTACGTTTTCACTCGGTCCTCGCGAA CAACAGCAGATCAGCTTTCAGGAGTTTAAAAATAAGCTTTTGGAACCAGGCTTAGTAGACCATATTGTTGTTACAAATAAGTCAGTTGCCAAAGTATACG TAAGGAGCTCTCCCCGTAACCAAGCAGACAGTGAAGTTGTTCAAGGGACCCCCCCTGGACAAAAAACTGGTGGCCAGTATACGTACTATTTCAATATTGG AAGTGTCGAGTCTTTTGAGGAGAAGTTAGAGGAAGCTCAAGAAGCGCTAGGCATTGACCCTCATGATTACATTCCTGTTACATATTCTTCTGAAATGGTT TGGTTCCAGGAGTTGTTGAGATTTGCTCCTACACTGATGCTTTTGGGAACTCTTCTCTATATGGGAAGGAAAATGCAAGGGGGACTTGGTGTTGGTGGTC CTGGTGGTGGTAAGGGCGGTCGTGGCATATTCAATATAGGAAAAGCCCACGTTACCAAAGTAGACAAAAATGCTAAAAACAAGGTTTTTTTCAAAGATGT TGCTGGCTGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTCAAGAACCCAAAGAAATATGAAGAACTTGGCGCAAAGATTCCAAAAGGT GCTCTTTTGGTGGGTCCCCCTGGCACAGGAAAAACACTTTTAGCAAAAGCAACTGCAGGGGAATCTGGTGTGCCGTTTCTTTCAATTTCTGGTTCAGATT TCATGGAAATGTTTGTTGGTGTTGGACCATCCAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCTCCCAGTATAATATTTATTGATGAGATTGA TGCAATTGGTCGAGCAAGGGGACGTGGGGGTTTCTCTGGTGCAAATGATGAGCGTGAAAGTACTTTGAATCAATTGTTGGTGGAGATGGATGGTTTTGGA ACCACTGCTGGGGTTGTTGTACTTGCAGGAACAAATAGACCCGATATCTTAGACAAAGCTCTATTAAGGCCTGGGCGATTTGATCGCCAAATATCCATTG ATAAGCCTGATGTTAAAGGCCGTGAGCAGATATTTCAGGTCTACTTGAAAAAGATCAAACTTGACCACAAACCTTCATATTTTTCACAAAGGCTTGCGGC GCTTACTCCGGGATTTGCTGGTGCAGACATTGCTAATGTTTGTAATGAAGCTGCCTTGATCGCTGCAAGAGGTGAGCAAAAACAAGTGACAATGGAACAT TTCGAGGCAGCTATTGATAGGATCATTGGTGGTCTGGAGAAGAGGAACAAGGTAAGTCTTTTACGCTTTTACTTCTTACTTTACCAGTAGCAAGGTTTGG CGAAAGGGTGACGGAGGGGGCTGGGTGTACTTCATAAAAGTCCTGCATATCATAGGGATGGTTAAAATTCTTTCTTCGTTTTTCTCATATTCTTTCCCAT CATCAGGATGGAAGTGAAATGTAGTTCTAGCATAAATAAGATATTGACTAATTGTTTTTACAAATGAATGATTGAGAATGATAATGTTTGCTTCTGTTCA TAACTCATAAGTTACAGTGGGATATGCATAGAAAGATGAGGATACGGGGAAGTTTGTGGGGATTCATTTATGGAAAAATATTTATGTTATTAATTTAATT ATACCTTTTCATATAAAATGTTATATCCCTGACTTAATAGGTTTTCTTACCTTCTGAATAATAGATTTCAAAGATTTATCCTGCTAAAGTTGGTCTTGAT AGGAAAGGTTATTGTATGCTAAAGCTTCCCTCTACGGTGTCTTTCATTTTATGTGTCATAGATTTCTGCATTGTATTCTGCCAGCATCATTTGATTATTA TGTGTTGATCTTAGGCTATGGTCAGAATTTAAACTTCAATTGACTATGGTTAAAATTACATGCTACAATGAATTGAATATGTTGTACTACTTTGGAACTC TCTCTTCTTTATGACTTGGCACTTGGTTAGTTAGAGTTTCTCTAATACCTTTGTTTCTCAACCAGATAATAAGCAAGCTTGAAAGGCGTACTGTTGCTTA TCATGAATCAGGCCATGCTGTTGCTGGCTGGTTCTTGGAACATGCCGAACCTTTATTGAAAGTAACCATAGTTCCTCGTGGCACAGCAGCTCTTGGATTT GCCCAGTATGTTCCAAATGAGAACCTTCTCATGACAAAGGAGCAGCTTTTTGACATGACTTGCATGACTCTTGGTGGCCGGGCTGCTGAGCAGGTTCTCA TTGGGAGAATCTCAACTGGAGCTCAAAATGACTTGGAAAAGGTGACCAAAATGACATATGCGCAAGTTGCGGTCTATGGTTTCAGTGACAAAGTGGGCCT TCTCTCTTTCCCACAACGAGAGGACTCATTTGAGATGTCGAAACCATACAGTAGCAAGACTGCTGCAATCATCGATAATGAAGCACGCGAATGGGTAGGC AAAGCGTATGAGAGAACAATACATCTCATCGAGGAACACAAGGAACAAGTGACTAAAATTGCAGAGTTGCTTCTTGAAAAAGAGGTGCTTCACCAAGATG ACATGGTTCGAGTTTTGGGTGAACGGCCATTCAAGTCTACCGAACCCACCAATTATGATAGATTTAAGCAAGGCTTTCAGGAGGAGGAAAAGATAATAGA AAGACCTGCCAATGATCCTGAGGACAGTGGTGGATCTTCGCCTTTAGATCCTCAGGTTGTTCCCACATAGTATTTATGTTTGTTATCTAACACGAATTTG TTGTTTTTCATCTCCTGATATGGGCAAAGCTTGTATACACTCTTAACTGCTAAATAAAAAGATAATTTATTTTCAAATTTTCTGTTATTGATATGCTACA AATCAGCC
• Tissue: pods
• Gene name: LI_gene_192829;
• Additional information: details;

Expression of Ll_transcript_351152

FPKM

• PAB: 12
• PNAB: 6.5
• PS1: 8.5
• PS2: 3.4
• PS3: 3.7
• PW1: 13.4
• PW2: 9.3
• PW3: 4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_351152

• Blastp: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial from Arabidopsis with 72.38% of identity
• Blastx: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial from Arabidopsis with 75.61% of identity
• Eggnog: Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity)(COG0465)
• Kegg: Link to kegg annotations (AT1G07510)
• CantataDB: Link to cantataDB annotations (CNT0000340)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019454081.1)
• Pfam: FtsH Extracellular (PF06480.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;