| Id Trinity | TRINITY_DN52460_c2_g2_i11 |
|---|---|
| Name Transcript | Ll_transcript_348625 |
| Sequence | ATTTTCTGTTCTGCAACAATATTTGTTGATGTCTGCAAATTGCAAATAGTGTAGACTGGTAGAGAGTTAGTCACAAAAATGGATAAGGTCAAAGCCACAA ATTTAGAAACAAAAAAAAAACAAGCATGTGAAGTCCTAAAACTGCATAATCACATATTTGACGCATGACCATTAGTCCATTACCCACTGCATCAAAAAAG AACACAAACAAGTGTGTGTTGTGTATAATTGTTTTATGTATTTACTTTTTTTGTGGTATTTGTGTTAGCATCTTCTTTTCTTAACCGAGAAACACTCTTA AACATTATCTTTTAGCTCAATCCACTCTTCTCCTCCCTTCACTTTCTCTCTCTTCTATCTTTATTCTTCCTCAATTCATTAATAAATTCCCACAATCCAA ATCACTCTTTTACATCTAAAGTTATTCTTTTTTCTCAATTGGGTCAATGAAACAAATCCATTTTTCTCCATAACACTACTCTACAATACTCAATTTTGCA TCTCAAAGTTACCATTTTTATTTTTTTCTTTATTTTTTCAGAATTCTATAACCATGTCTAGAATCTTCTCAAGATGGAAGAAGGTGAAGGAAATGGCATC ACTGTCAGATACCCATTTGGCTATTTACTCGAATAATCGTTGCATGAACCGAACTGGGTTCAAATTCAACCAGATGCGTCCAATCTCAACCCACCTGAAG AATTCCAACCTCCACACTATCGCTGCCCATCGCCGCCGTGAACCGCTCATCGGAGTTCAGGAGCGGTACAAGTCGGACCGTGGTGGCTCGGGCGATATCA GCAGCCCGGCACGGAGGATTCGGGCAGAGGCGAATTGCCCACGTTGCACCAAAGATATGAACCTCATATTCTCCAGTAACCATTTTCCACCTTCTGATTC AAATTCAGGTTCTGAATCTTTTGATTCCAATTTAGCATCACCATCAATAAGTGAAGAGGGTAGTGGTTACCAATCTGTGAATATTTGCCCAAGTTGCAAA AGTGCTTATCACTTTAGGCCTAACAACACTGCACCTTTGCAAGGTACATTTGTGGAGATTGGAAGGGGCAGTAATAGTAACACTAACAGTGTTGCTAAGA GTGGGGGTAGTAAAATTCCTAGGAGAATCACACATGGTAAAGGTAGTAGTAGTGGTAAAAATGGTATTAGTGGTAATTGGCTTGAAGTGGCAACATGGGA CAATATAAGATCAGCTAAAATTAATGGTCATAATGGGGAGCCACCTGAGGATTGGCCTCCACCACCACCACCAATTGGTAATGATGGGAATGGGAATGGT TTGGCTGTGCATAATCCTCCAGGCCCATCTTTTGCACCTGGGGTTAATGTTATTCGGCATACCGGGCTGAGGGACGGCCGCGCGGGTGGCGGTGGAGGTG GAAGCAATGGAGAGAAGACTACTTGGGGAGGGTCTAATTTGGGGAAGGATTTGCCATCCCCAAAGGAGATCTGCAAGGGTCTTGACAAGTTTGTTATTGG CCAAGACAGAGCCAAAAAGGTGCTTTCTGTAGCTGTATATAACCACTACAAGCGAATATACCATGCCACTTTGCAGAAAGGGTCAGGACCAGATTCAGGA ATTTTAGAAGGATTTGATGATGACGATAATGTGGAGCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCGAAAA CACTAGCTCGATTTGTGAATGTTCCTTTTGTCATTGCCGATGCGACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTTGAATCAATACTCTACAA ACTTCTTGCAGCAGCAGATTTCAATGTTGCAGCAGCTCAACAAGGGATAATTTACATTGATGAAGTTGACAAGATAACTAAGAAGGCTGAGAGCTTAAAT ATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCAAGGAAGAATC CACGTGGAGATAGCATACAGATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACAATTTCGGAGAGACGACAAGA TTCTTCTATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGAGCTGGAGGACTGACAGATTCGGCAGTAGTATCATCTTTACTTGAGTCGGTGGAAAGT TCTGATCTTATTGCATATGGCCTCATACCAGAGTTTATTGGACGATTCCCAATCTTAATTAGCTTGACAGCTTTAACTGAAGACCAACTTATGCAGGTAT TCTGTCATTGTAGTTTTTCCACATTTCTCTATCCAAGGACTATTTTTGCTTGCCCTTATTGCTACTACTATAATTATATTTTATCACCATTGACACTTAC TTATATGCTCCCTCTAGTCCTATTTATAAGTTGCATCTAGAAGCTTTCTTTGGTCCTTTTTATAAGGTACTTTATATTTTCTATGCAACATTTCTTGTTT CTTTCTTCTTATTTGCCCTTTGTTCCTTAATGAAAGACAATAAGTTGTGGAATTTCTAAGACGAGTTAAGAGAGTAAAATTGTAATGTCATAGTATCATT TTAAAAAATCAAGAAAAGTAATATCCTCTTTGGTTAGTGTTGTATAGTTAAAGACGGCTCATATAAGGACTAAGGGAGCATAAAACTAAGAAACCTTATG ATCTTCTAGCCTTCTAAAGGAATTAAATCTCTATGAATACCTCTTATTGTGTAAAGGATTTTTATTTATTATTGTCATTATGATTATAGTGTATTTTAAA AAAGCTAAATACTAATTGACCATTGCCTTTTGAATTCAATAATTAATGTAAAGAATGACAAAATGACTCTGGCATCTGCCAGTGTTCAGTTCATATCCTT TATAGATTGCACAAGAAAGAAGAAATTTGGATAAGGATACAAGTGTCCCAAATGGACTTTTTAACTGAAGGGTAATGGGTATTGACTATATTATGATTAT TTTATATGTACAAAAGGACTAAAGGAGCTTGTGCGCCTCTCTCCTTTGGGCCTATAATTTTCCAGCTATCTATTTTCTTTTTAATTGAACCAGAAAGAAG GGTCACTGGCATTGTGAATATCATCTGGCATTTTTTTTAATATGCTTGCGACAATGTATATATTAGTTTATAAATCTAGATTTCTGCCATGTGGAATGCT CAACATTGTTTGGTCATGACTCATGACTACTGAAATATTGTTTGGTTTTACAGGTCCTCACGGAACCAAAACATGCTCTTGCTAAGCAATATAAGAAACT ATTTAGCATGAATAATGTAAAGCTACACTTCACAGAGAAAGCTCTGAGACTAATTGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTGAGA GCCCTACTGGAAAGCATTTTAACTGAAGCCATGTTCGAGATTCCAGATATTAAGGAAGGAGATGAGCAGATTGATGCTGTTGTTGTTGATGAGGAGTCAG TAGGATCAGAAAATGCCCTTGGGTGTGGTGGAAAAATTCTTCGTGGAGATGGCGCTTTGGAGCGGTACCTAGCTAGGTTGGAGAGTTCAGTGGTATGATA TTATATCTGAATGCAAGCTAACTAATGCTGTTTATAGATTTAGTTTGGGTGGTGGCTCCTTGTCCAAATTACCTTTAGAAAGTATAAACCCAAGCCAGCG AAGTATTTCATAGTGGAGATGTTTTCCTTTATTTGCAGCAGTGCTTATGAGATATGAGCATGTGGTAGGTAGTTATGACCTAATTTGCTTCATGCATTAT AGGTTAATGGTGATGTAGCTGAATCAGAGTTGCAAGAAGGGGAATTGGAGATTTCATCAAGAGCCATGAGCATGTAATAATTATATTTACTACAATCAAG GTTACCAATTATCATTGTCATTGTTGTTTGTAAAATCACATTCATGATTGTTGTAATTATCCCTTGTATAACAACATAGCTACTGGTTTAAGTTTCATTG GATAGGAAAGAAATAGAAAAGTGAAAGATGTAATATAAGGAAGATCTAGTTTTAGACAATGTTCTCTTGTTCTGCTGCTCCCCTGAGATCAAGGATCATT ATGTGGAAGCACTGTCTTATTATGTGAAATCATTATGCCCCTTCACCCTACCCTCTTCTTTATTTGGAAGAAATTATTCACTTCAAAAGTTGATATCCTA ATGCAAACTTGACTAGATGGGTTATGAAAAGTTCAGCTTTTTCTATAGTCCAAGATGTGATAAGCAATTAAGCATAGGATAGAAGTTTGGGATTAGATAC ATCAGGAAGAAAAAAAAATCTTAAATGTTATGTTTGGTTGAATGGAATGGAGCATAATGAAATGAAATGGCGGCAATTTCGTATAAGTCAATCTTTACAT TAGGAGTTTAACAATGCTCCATGGTATGTTTCTTTGATACATTAGTGTGTTATGCTTATGAGAAACTCATGGCAGTCAGAGTAAGAACACTTATAGGCTT AAATTTTTATTATGGAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_192899; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_348625
| Blastp | CLP protease regulatory subunit CLPX3, mitochondrial from Arabidopsis with 55.79% of identity |
|---|---|
| Blastx | CLP protease regulatory subunit CLPX1, mitochondrial from Arabidopsis with 83.62% of identity |
| Eggnog | ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP (By similarity)(COG1219) |
| Kegg | Link to kegg annotations (AT1G33360) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019449440.1) |
| Pfam | AAA domain (Cdc48 subfamily) (PF07724.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |