Ll_transcript_348617

• Id Trinity: TRINITY_DN52460_c2_g2_i7
• Name Transcript: Ll_transcript_348617
• Sequence: ATTTTCTGTTCTGCAACAATATTTGTTGATGTCTGCAAATTGCAAATAGTGTAGACTGGTAGAGAGTTAGTCACAAAAATGGATAAGGTCAAAGCCACAA ATTTAGAAACAAAAAAAAAACAAGCATGTGAAGTCCTAAAACTGCATAATCACATATTTGACGCATGACCATTAGTCCATTACCCACTGCATCAAAAAAG AACACAAACAAGTGTGTGTTGTGTATAATTGTTTTATGTATTTACTTTTTTTGTGGTATTTGTGTTAGCATCTTCTTTTCTTAACCGAGAAACACTCTTA AACATTATCTTTTAGCTCAATCCACTCTTCTCCTCCCTTCACTTTCTCTCTCTTCTATCTTTATTCTTCCTCAATTCATTAATAAATTCCCACAATCCAA ATCACTCTTTTACATCTAAAGTTATTCTTTTTTCTCAATTGGGTCAATGAAACAAATCCATTTTTCTCCATAACACTACTCTACAATACTCAATTTTGCA TCTCAAAGTTACCATTTTTATTTTTTTCTTTATTTTTTCAGAATTCTATAACCATGTCTAGAATCTTCTCAAGATGGAAGAAGGTGAAGGAAATGGCATC ACTGTCAGATACCCATTTGGCTATTTACTCGAATAATCGTTGCATGAACCGAACTGGGTTCAAATTCAACCAGATGCGTCCAATCTCAACCCACCTGAAG AATTCCAACCTCCACACTATCGCTGCCCATCGCCGCCGTGAACCGCTCATCGGAGTTCAGGAGCGGTACAAGTCGGACCGTGGTGGCTCGGGCGATATCA GCAGCCCGGCACGGAGGATTCGGGCAGAGGCGAATTGCCCACGTTGCACCAAAGATATGAACCTCATATTCTCCAGTAACCATTTTCCACCTTCTGATTC AAATTCAGGTTCTGAATCTTTTGATTCCAATTTAGCATCACCATCAATAAGTGAAGAGGGTAGTGGTTACCAATCTGTGAATATTTGCCCAAGTTGCAAA AGTGCTTATCACTTTAGGCCTAACAACACTGCACCTTTGCAAGGTACATTTGTGGAGATTGGAAGGGGCAGTAATAGTAACACTAACAGTGTTGCTAAGA GTGGGGGTAGTAAAATTCCTAGGAGAATCACACATGGTAAAGGTAGTAGTAGTGGTAAAAATGGTATTAGTGGTAATTGGCTTGAAGTGGCAACATGGGA CAATATAAGATCAGCTAAAATTAATGGTCATAATGGGGAGCCACCTGAGGATTGGCCTCCACCACCACCACCAATTGGTAATGATGGGAATGGGAATGGT TTGGCTGTGCATAATCCTCCAGGCCCATCTTTTGCACCTGGGGTTAATGTTATTCGGCATACCGGGCTGAGGGACGGCCGCGCGGGTGGCGGTGGAGGTG GAAGCAATGGAGAGAAGACTACTTGGGGAGGGTCTAATTTGGGGAAGGATTTGCCATCCCCAAAGGAGATCTGCAAGGGTCTTGACAAGTTTGTTATTGG CCAAGACAGAGCCAAAAAGGTGCTTTCTGTAGCTGTATATAACCACTACAAGCGAATATACCATGCCACTTTGCAGAAAGGGTCAGGACCAGATTCAGGA ATTTTAGAAGGATTTGATGATGACGATAATGTGGAGCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCGAAAA CACTAGCTCGATTTGTGAATGTTCCTTTTGTCATTGCCGATGCGACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTTGAATCAATACTCTACAA ACTTCTTGCAGCAGCAGATTTCAATGTTGCAGCAGCTCAACAAGGGATAATTTACATTGATGAAGTTGACAAGATAACTAAGAAGGCTGAGAGCTTAAAT ATCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCAAGGAAGAATC CACGTGGAGATAGCATACAGATGGACACAAAAAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACAATTTCGGAGAGACGACAAGA TTCTTCTATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGAGCTGGAGGACTGACAGATTCGGCAGTAGTATCATCTTTACTTGAGTCGGTGGAAAGT TCTGATCTTATTGCATATGGCCTCATACCAGAGTTTATTGGACGATTCCCAATCTTAATTAGCTTGACAGCTTTAACTGAAGACCAACTTATGCAGGTAT TCTGTCATTGTAGTTTTTCCACATTTCTCTATCCAAGGACTATTTTTGCTTGCCCTTATTGCTACTACTATAATTATATTTTATCACCATTGACACTTAC TTATATGCTCCCTCTAGTCCTATTTATAAGTTGCATCTAGAAGCTTTCTTTGGTCCTTTTTATAAGGTACTTTATATTTTCTATGCAACATTTCTTGTTT CTTTCTTCTTATTTGCCCTTTGTTCCTTAATGAAAGACAATAAGTTGTGGAATTTCTAAGACGAGTTAAGAGAGTAAAATTGTAATGTCATAGTATCATT TTAAAAAATCAAGAAAAGTAATATCCTCTTTGGTTAGTGTTGTATAGTTAAAGACGGCTCATATAAGGACTAAGGGAGCATAAAACTAAGAAACCTTATG ATCTTCTAGCCTTCTAAAGGAATTAAATCTCTATGAATACCTCTTATTGTGTAAAGGATTTTTATTTATTATTGTCATTATGATTATAGTGTATTTTAAA AAAGCTAAATACTAATTGACCATTGCCTTTTGAATTCAATAATTAATGTAAAGAATGACAAAATGACTCTGGCATCTGCCAGTGTTCAGTTCATATCCTT TATAGATTGCACAAGAAAGAAGAAATTTGGATAAGGATACAAGTGTCCCAAATGGACTTTTTAACTGAAGGGTAATGGGTATTGACTATATTATGATTAT TTTATATGTACAAAAGGACTAAAGGAGCTTGTGCGCCTCTCTCCTTTGGGCCTATAATTTTCCAGCTATCTATTTTCTTTTTAATTGAACCAGAAAGAAG GGTCACTGGCATTGTGAATATCATCTGGCATTTTTTTTAATATGCTTGCGACAATGTATATATTAGTTTATAAATCTAGATTTCTGCCATGTGGAATGCT CAACATTGTTTGGTCATGACTCATGACTACTGAAATATTGTTTGGTTTTACAGGTCCTCACGGAACCAAAACATGCTCTTGCTAAGCAATATAAGAAACT ATTTAGCATGAATAATGTAAAGCTACACTTCACAGAGAAAGCTCTGAGACTAATTGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTGAGA GCCCTACTGGAAAGCATTTTAACTGAAGCCATGTTCGAGATTCCAGATATTAAGGAAGGAGATGAGCAGATTGATGCTGTTGTTGTTGATGAGGAGTCAG TAGGATCAGAAAATGCCCTTGGGTGTGGTGGAAAAATTCTTCGTGGAGATGGCGCTTTGGAGCGGTACCTAGCTAGGTTGGAGAGTTCAGTGGTTAATGG TGATGTAGCTGAATCAGAGTTGCAAGAAGGGGAATTGGAGATTTCATCAAGAGCCATGAGCATGTAATAATTATATTTACTACAATCAAGGTTACCAATT ATCATTGTCATTGTTGTTTGTAAAATCACATTCATGATTGTTGTAATTATCCCTTGTATAACAACATAGCTACTGGTTTAAGTTTCATTGGATAGGAAAG AAATAGAAAAGTGAAAGATGTAATATAAGGAAGATCTAGTTTTAGACAATGTTCTCTTGTTCTGCTGCTCCCCTGAGATCAAGGATCATTATGTGGAAGC ACTGTCTTATTATGTGAAATCATTATGCCCCTTCACCCTACCCTCTTCTTTATTTGGAAGAAATTATTCACTTCAAAAGTTGATATCCTAATGCAAACTT GACTAGATGGGTTATGAAAAGTTCAGCTTTTTCTATAGTCCAAGATGTGATAAGCAATTAAGCATAGGATAGAAGTTTGGGATTAGATACATCAGGAAGA AAAAAAAATCTTAAATGTTATGTTTGGTTGAATGGAATGGAGCATAATGAAATGAAATGGCGGCAATTTCGTATAAGTCAATCTTTACATTAGGAGTTTA ACAATGCTCCATGGTATGTTTCTTTGATACATTAGTGTGTTATGCTTATGAGAAACTCATGGCAGTCAGAGTAAGAACACTTATAGGCTTAAATTTTTAT TATGGAG
• Tissue: pods
• Gene name: LI_gene_192899;
• Additional information: details;

Expression of Ll_transcript_348617

FPKM

• PAB: 6.9
• PNAB: 4.3
• PS1: 6.8
• PS2: 5.4
• PS3: 8.2
• PW1: 4.5
• PW2: 4.1
• PW3: 3.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_348617

• Blastp: CLP protease regulatory subunit CLPX3, mitochondrial from Arabidopsis with 55.79% of identity
• Blastx: CLP protease regulatory subunit CLPX1, mitochondrial from Arabidopsis with 83.62% of identity
• Eggnog: ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP (By similarity)(COG1219)
• Kegg: Link to kegg annotations (AT1G33360)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019449440.1)
• Pfam: AAA domain (Cdc48 subfamily) (PF07724.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;