Ll_transcript_348624

• Id Trinity: TRINITY_DN52460_c2_g5_i4
• Name Transcript: Ll_transcript_348624
• Sequence: AGAGAAGGAAGGGAGAGTGCAATCCATCCAAAAAAACATAAGTAGGAAAGAGTGTTTCACTTCCACACACAAAACCCACAACATATGCAACAAAAACCAA AATTCACATTCATGGCTTTGTTCTTTCACAGCAACTATTTGGACCATAATAACCTATGGATCCTGAAAGTGAAGAACAAGCTTTAGATGTACTCAAGTTT TTTACTTTTTGTAACAAGCAACAAAGAATCACATTCATGCTTCATTCCTTTACTATCACTGCAACTCTTTGGAGTTAACAAGCCATAGATCCAGAAAGTA AAGAACAATCTTTATAGGTGCTCAAGTTTTTTTCTTTTTCTTTTTTAAACCCTTTGTATTTGTAAGTGTTTTTTCAATATCCCACCAAAATTGAAAGCTT TCTTCAAAAACAAAAACACAAATCATGTATGCTTTGTTTCTGGATTTGTAAACCACACCCATGTGTCAATTTTTGCTTTGAAACATGTTCTGGGTGGGTA TGGAGAATAAAGGTGGTAGCTTTTTAAGAAACTAGAGTCTTTTGAGTGGTTAGTTTTGTTGGCACTGAGCACCTTGTTATTGTTGTTGTTGTTGTTCTTG TTATCTTTGTTGAATGAAGGCCATGCCCTTGCCTTTTGAGGAATTTCAAGAGAAGGGGGTTTTGGATTTTTGTTCTTCTGCAGCTTCAGATTCTTTTCCA CTCCTTTGGCATCAACAACCACAAAAGTGGAGCATAGACAAAGAGTTTTATTGCTATGTGGGCACTGAGCCTAATTCTGTTCTTGACTCAAGAAGAAGCC CAAACCCTTCTTTATCATCTTCCACAATGTCCTCTTCTCTTGGCAGCAGTAACAACACCACTGTTGCAGCCACAACCTTCTCAGAGAACCCTCTTCATGC ATCCTTGGAAGCTAGCCCAGAAAAATGTGATGTGAGAATGGAAGATTGGGAGGGTCAAGATCAGTCTATTATGAGGTTAATCATGGGTGATGTTGAAGAC CCTTCTGCAGGATTGAGCAAGCTCTTGCAAAGCAGTGATTGTGGTTCTCGAATTGTCGATTTCAACGAAGGGTTTGGTGTTGTGGATGAAGGGTTGAATA TGGTAAGTAATATTGATCCCTTTGTGCAAGGGAATTACCATGCCTTCCCATTTGTTGAGAATATAGATGGCCACAGTGCAAAAACTGGTTCCATGTCTGT CTCGGAATCAATTTATGTTTCAGCTAACAATTCTTTGTTGGTTTCGCCGTCCCCTGGCGTGTTTAATTCTCAGCAGCATCAGCAGCAAGGGATTGGTGTT GTAGATGAGAAGCCTCAACTTATCAATCCTCAGTTCTCGGGTAGCCCTTCTTTCTTTGTGCCATTGTCATACCCTCAGATGCAAGAGCAGGAAGTTTTGT CTCAGCATCAGGCAGAACACCATTTGCCCAACTCAGTCGGGCACAATTATCAGGTTCCAAGGTTTCCCCTTTTGGACTGTGGGCAAGAGCTAATTTCTAG GAGGCAGCAAAAACAACTTCCGTTGTTTCCTCATCATCATCTGCAACAACTACAACCATTGGCTGTGCCATCTGCAAAACAACAGAAGGTGAATTCGACT GGGGATGATGCAAGCAACCAGCTTCAGCAGAGTATATTTGACCAGCTATACAAGACTGCCGAGCTGATAGAAGCTGGTAATCCGGTACTTGCGCAAGGGA TATTGGCGCGGCTCAATCAGCATCTCTCCCCAGTTGGTAAGCCTTTCCAAAGGGCTACTTTCTACATGAAGGAGGCCTTGCAGTTACTGCTCAATACGAA CATTCACAGTTCTATTGCTTTCTCACCAATCAATTTCATATTCAAAATTGGAGCTTACAAGTCATTTTCTGAGATATCACCGGTTCTTCAGTTTGTCAAC TTCACTTGTAATCAAGCCCTCGTCGAAGTTCTGGAAAGGTTTGATCGAATTCACATTATTGATTTTGACATTGGGTTTGGAGAGCAATGGTCTTCTTTTA TGCAAGAGCTTGCCTTGAGAAATAATGGTGCAACATCTCTTAAAGTTACGGCTATTGTATCTCCCTCCACTTGCGATGACAATGAGCTCAATTTTATCAG ACAAAATTTGAACCAATATGCCAAAGACGTTAACATGTCGTTCGAACTCAATGTTCTGAGCATTGAATCATTGAACTCTCCGTCTTGTCCTCTGGCTTGT CAGTTCTTTGATGATGAGGCAATTGCTGTGAATTTGCCACTTTCCTGTTTCGTAAGTTACCCATCGATGGTTCCTTCAGTCCTTCACTTTGTAAAGCAGC TTAGGCCAAAAGTGGTGGTCACTTTGGATAGAAATTGCGATCGCATTGATGTACCATTTTCCACCAATATAGTCCATGCTCTTCAATGTTACTCAGCCTT GCTTGAGTCACTAGATGCAGTAAATGTGAGCTCGGGTGTCCTCCAAATCATCGAGAGGCATTTCATCCAACCAGCCATTAAGAAAATTGTACTTGGCCAT CAACACTCACAGGAAAAGTTACCTCCTTGGCGCAATCTGTTTCTTCAAACTGGATTCTGTCCGATCGCATTTAGTAACTTCACAGAAGCTCAAGCTGAGT GTTTAGTACAAAGGGCACCGGTGCGGGGATTCGAAGTGGAGAGAAGGCATTCATCTCTTGTCCTATGCTGGCAGCGGAAAGAACTTATCTCGGTTTCAAC TTGGAGATGTTGAGCAGCTGCTAATTAACTTATATTTTCAAGGTGCTTCATAACTTGCTACTGTAGTTTATGTAATTGTTTATGTAGGCTTTTTTATGTG ATCCGGATCGAAATGTTCTCGTGACTATATGTGTTGAAATCTAGGATTCTACAGCTCTATGTCTAGTATGCCGGTTTCCATGTGGGTATTATGTCTCCCC ATTTCCATCATCTACTATGTGTGACTGTCTTTGTTTATCTTGAACACAAGGCAAATTGTTTTGGGAGTACAAAACGATTTAGCCAAGAATGCAGTCTAAA CTTTTCGGGCATTCTTTTAGTGTATCTTGATTACTGAATTATGGACTGAGTTTGACATATATTATTGGATTATGTATCATGAAAATCTTTTGCCAATGCA ATCATGTAATATGCATAGTGCAGATATTTCGCCCTTGATATCCGGGTTTCTCACCGGTCGCATTTAGTGACTCTACCGAGTACCGAGCAGATTGGTTAGT GCTGATGGTTCCTGGTAGAGGATCTCATCTCAGTTTCAACATGGATATGTTGAGGGAGAGACAATCTGCACATTTGACTGCTAATTAATTTTAAAATGCA AAGTTGCTTCATAATTAACTGCTTATGTTGATCTTTAATGAATTTGCCTTTGCTATGGTGTTGTATGCTAATTGTCTTTGTTGTAGTGAAACTCTACAAA CTACTCCGTTTTTACACCGACACAAATCACCTAATTTATATACGTTACACTGGTACCTAGGGGAGGTATGTGTAATTGTCATGTTAGATTAGGAGTTTTT TGTTCAATGGTTTAGTTAGAACCAATTTTTCCTGATATTTTAAGGAATAAAAAATGAGAAATTAATTGGCACCAAGTACTAGCACAATCATGCTTCAATC TCTAGTGTCTTTTTGTATTTTTGGAAACATAGGCCTTGATTGTTATTAGATCTTAACTTTTTTATTTTCAAATAGAGTTATCTCTTAGCCTCTTATTGGC CAAACTACTTCAATCAAGTTGTGCATCATTTGTGTTCAGTTCTACCAAATCTACTCAAAATAAATTATAGGTAAATGTTATTTGTCGCATTGCAAATCAT AGCAGTGACTACTAACAATGTGTTGGTTTAGTGGTGTAAGGCCCTACTGGATCCCCATG
• Tissue: pods
• Gene name: LI_gene_192902;
• Additional information: details;

Expression of Ll_transcript_348624

FPKM

• PAB: 9.9
• PNAB: 16.7
• PS1: 18.7
• PS2: 9.3
• PS3: 12.7
• PW1: 9
• PW2: 11.1
• PW3: 6.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_348624

• Blastp: Scarecrow-like protein 6 from Arabidopsis with 54.27% of identity
• Blastx: Scarecrow-like protein 6 from Arabidopsis with 54.42% of identity
• Eggnog: Scarecrow-like protein(ENOG410YANM)
• Kegg: Link to kegg annotations (AT4G00150)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019447048.1)
• Pfam: GRAS domain family (PF03514.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;