Ll_transcript_349300

• Id Trinity: TRINITY_DN52463_c2_g4_i1
• Name Transcript: Ll_transcript_349300
• Sequence: CAATTTCATTCATTCATTGTTGTAAATCTAATGGTCTACATTGGTGACGAGAAGAGTCATTTAAGATTTCCACTTTTATCTTTCTCATCACCTCTTAGTG TCACTCATGTGAATTGTTGGATTTGCCAACAATGATCGAACGAAATTGAGTGTAACTAGTGTAATTCAATTTTTTGTATAAACCAATCTTTCTTCATATA TATTATGGTACTCTAAAAATACTATTTAAGGAACAAAATTAAAGAGATAAGAATGATATCTAACGAATTACTTATGAGTTTAAAATGTATACACTGACAG TGTAAAGATTTATACACTTCATTATCTATCATTCATTTGTATTACTTTTTCTGAAAAGTAGAAAATAATAATAAAAAATCAATGGGATAATGCAATGAGA GTATATAAAACTCATACAATTTTTCTTGGTTACTTATTTTAATTGTTTAGATATTAACTGATAACAGTTTTTGAATCATCTGGATCGCAATGTCTTGGGC AACTGCATTGGTGAGGATCTCTCCGTACACCTTCTCCGCCATCGGCATCGCCGTCTCTATCGGCGTCTCCGTCCTCGGCGCCGCCTGGGGAATATACATA ACTGGTAGTAGTTTGATTGGTGCTGCAATCAAGGCTCCACGTATTACTTCCAAAAATCTCATCAGCGTAATCTTCTGTGAAGCCGTCGCTATATATGGTG TTATTGTAGCTATTATTCTACAAACAAAATTAGAAAGCGTTCCATCGTCAAATATCTATGCACCTGAGTCTCTTAGAGCTGGATATGCAATCTTTGCTTC TGGAATTATCGTCGGCTTTGCAAACCTTGTTTGCGGGTTGTGTGTAGGAATAATCGGAAGCAGTTGTGCATTGTCTGATGCTCAAAACTCCTCTCTCTTT GTGAAGATTCTTGTGATTGAGATCTTTGGTAGTGCACTTGGACTATTCGGAGTCATTGTTGGAATTATTATGTCAGCTCAAGCAACATGGCCAACAAAAG TTTAGTTTTTCGTTACGTCGGAGCGCCGGAATGAAGAAACTATAGTAGAGTGCAATATGTTTTTAGGAATGTAAAATCCCTCCATCACAATTTTAGGCTG TATTATTTACCAGTGAGTTGTTAGAATGTCTTGTGTATCATCAGATATTTGAATCTGTTGGTTCAGTTTCAATATTCTTTGGAAGACTAAACCTTTTGTG GTTGTTCATTTGTCAATTAAAAATGTGAAATTATTTGGGCAATTGAGTAAACTCAACAAACATGTTTGTTGAAATCTGTGGTCTCAATTTGAGTTCAGTT GTGTTCTGAAGTTTGTTTTTCATGGGCAATAAGTTCAAAATCTATGAGAATGGTGGATTCCAATTGTTAGTATGGACAATTTGGAAAATATAATTAAAGG GCATGTATGGCTTGGTTCCATGTGTATATTTGATATAAACTATGTACTGAGTTTTGAAATTGGTACTGCATAACATGTATGATCTGAATATTCATAAGTG GAGCTTGAATATTTATATTTATTTTCA
• Tissue: pods
• Gene name: LI_gene_192928;
• Additional information: details;

Expression of Ll_transcript_349300

FPKM

• PAB: 0.3
• PNAB: 11.3
• PS1: 4.8
• PS2: 3
• PS3: 4.6
• PW1: 7.3
• PW2: 6.9
• PW3: 4.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_349300

• Blastp: V-type proton ATPase subunit c''1 from Arabidopsis with 94.67% of identity
• Blastx: V-type proton ATPase subunit c''1 from Arabidopsis with 94.15% of identity
• Eggnog: F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity)(COG0636)
• Kegg: Link to kegg annotations (AT4G32530)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_016183543.1)
• Pfam: ATP synthase subunit C (PF00137.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;