Id Trinity | TRINITY_DN52475_c1_g1_i6 |
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Name Transcript | Ll_transcript_350758 |
Sequence | CACGGGTATTGTACTACCTGTACCTGCGGGTACCTGGTATTTGTGTAATTATCATATTACCCTTGATTAAAGTACACACACTTTCCTAATACCCTAACCC ACTTAGAACCTACTCTTTTTCCGTAAAAACCTAATCCCCTTTCTCATTCCCTTCTCTAATTTATCTCTCCTTCCAGCAGCCAAGAGCCCAAGAGGTTAGT TTCTTTTTCTCATTCCCTTCTCTAATGTTAGGTTTTGTTTCTAATTGTCACACACCTTACTTCCATCTTCCATCTTCTAATGTTTCGTTTTGATCTTCCT AGTTTCTCCAAGAGGTGAGGTTAATAACGTGTTTTATTAGAATCTGTCCAGTTTCACTTTCTTACTTCCAGTTTCTCTTTCCCTTGCTTTATGAGTGCTC TAACAACCACTTTACAAACTGAACCACTTCATCATCAAATGTTATGTTTTTTTCACCTCTGAAATTAACACCTGCTTCTGAGTTCATGAAGGTGATGATT CCTCGTTGAAAAAAATGTTCTTTTTCTCTGAGTTCATGAAGGTGTTGATTTCTCATTGCATTCTAGGTGAATTTGGAAACATTGTTTTTTCCAAATTAAT TCAATTATTTTCTGGGTGAATTTGGAAACATTGCATTCTGGGTGAATTGGGTTAATTTGGAAACATTGCAGTCTATGAAATTAGTAAAAATTTAATAATG GGTTGTTCAAAGCTTAACATGGTTTTTATTTAGAAAACTTGCTTTCTTTATGTTATTTCCTTTTACATGACCTCACTTACACATATGTATTGCCTATTAT GCCTCTAGTTATCTACTAAATTATAATTTTTATATTGTATCTATGCAATATGTCTACTGAGCAAGCCTCTGTTGGGCAAGATCAAGTTCCCAATGCCTCT AATGTGGGTGAATCAAACTCAGTTCCAATTAATGTAGATGTTCCTTCGATTCAAGATGAAACTCATTGTTCAAGTCCAAATGATGCTGAAGAAGGTCAAC CACAACAAAGATCATCTGTTTGGAATCATTTTAAGAGGCAAAAGGTAGATGGAAAGTGGAAAGCAGCTTGCAATTATTGTGGCAAGCGACTATTAGGAGA TCCAAGTCAAGGAACAAAACACTTGCATAATCACTTTAAAAGTTGTCTACGTCATTCAAATTCAGATATAAAGCAAGCACTTCTTAAAACTGCAAAAAAA GGGAATGAATCTGTGTTAGTTGGTTCGTATGCATTCAACCAAGAGGCTGCAAGACACGCACTTGTGAAGATGATAATTTTTCATGAGTACCCAATGTCTA TGGTTGACCGTGTCTTATTTAAGGAATTTTGTGGTGCATTGCAATCTTTATTTAAAGGAATTTCTCGCAACACGGTGAAGGGTGATATCACAAGGATGTA TAATGAAGAGAAAGTGAATATCATGACTTTAATTTCAAAAAATCAAAGTCGGTTTGCAATTACAACCGATATGTGGATCACTAGTAACCAAAACAAAGGC TATATGGCTGTCACGGCACACTTTATTGATGACTCATGGATTCTACAAAGTCGACTTATGAGGTATTAATGCCAAACTTTTTAACATTCTCATAATGTTT ATAGTGTTTGTATTGTTTTGGTGACTGTTTTAACATTAGTTTTTTGTTACTGCATTCATAAATTAATCTATTGATCATGATATCATAACTGAGACTACTG TCCAAGCTTGATGTGATAGCTTAAGATAGTTCAAATTATTTATTCACGGGAACACAAGTAAATATGGGTAATTACACCAGTAAGTTTTGATAGCTTAAGA TTAAAATATAGCTATGGTAGAAGCACTGTTCCTTACTTTAGGTGATGAGTTTGAAAAACAAAACAAAAATAAACTGATAGATTACTAGGTTTTACTATGC ATATTGAATATTGACGCTGTGCAAATAGTCTAAAGTGTATTTTAGTAAGCCTGCCTCCAAGAGTAAATGTGATCACCAGGATTCAACTGTTCTATATCAA TATTGTTAGAAAGCAATCCCATTACCCTGTGATTTCAAGATTGCAGAAGTTAGAGGGAAGAAACTAGAAAGCATTGAATATGAATTGAGGTCCTTTTATT TAAATATATAATAAACCAGAGAGACTCAATATTTGTTGATGTCCTTTGCTAATGTTTATAGTGTTTGTATTATTTTGGTGACATTATTGTTTTATATTTT GATTAATGATAGGTTCATATATGTGCTCGCTCCTCATACTAGTGAAGCACTTAGTGATTGCTTGTATGATTGCCTATTGGATTGGAACCTAGATAGGAAG TTGTCTACTCTGACTGTTGATAATTGCACTACAAATGATAGAATGATTGAGTGCATGTTGTGTAAGATTTCACCTAGATCATTTATTTTGGGTGGACAAT TATTTCACATGCGTTGTTCTGCTCATATATTGAATTTGATTATCAAGGATGGGTTGTCCGTTATCTCTAGTGCAGTAGAGAGGGTTAGGGATAGTGTTAG CTTTTGGACGGCAACTCCAAAAAGAGAGGAGAAATTTGAGGAGACATGTGAACAGTTAAGCATTCGGTATGATAAAAAGTTAGAACTTGATTGTAAGACT AGGTGGAATTCTACATTCTTGATGCTTCATGTGGCAATAATATACAGAGATGTCTTCCAAAGATTATCACTAAGAAAAAGTCAATATAAAACATTACCGA GTGAAGATGAATGGGAAATGGCCAATGAAATTTGTCAAAGGTTGAAGTTATTTTATAATGTGACATTAGTGTTTTCAGGTACTTTGTATCAACTGCAAAT GTCTTGTTTCCGAAAATTTGTCAAATCAAATTGGCATTACTTGATTGGCTTCAATCTACTAATCTTGTTATTCAACAAATGGCTGAAGCAATGTATGCTA AATTTGATAAGTATTGGGGTGATATAGGTGCTTTGATGGCCGTTGGTGCTGTTTTAGATCCTAGATATAAACTATGTTTTCTAGAATTTTTTTTATCCCA TAATTTATGGACAGCAACATGTTTCTGAAATGAACAAGGTCAAAAGTATTTGTGAAGATTTGGTAAAAGAGTATGAGCATAAAATGAAGGGTAAAGGGAG TGTTTTTTCAAGTCAAAGTCAAACTCTAAATTTAATAGATGTGGGGGTAGATGGAGTGAATATTGATTGGAGGGCAAAATATCAAAGTTTTGTTTCTGAG CAAAATATTGCTACAGCACACCGTAGGTCAGAACTAGACATATATTTAGAGGATGGAGTATTGCCCGATCAAGGTGGAGAGTTTGACATCTTAACTTGGT GGAAGGTAAATGGTATAAAATATCCAACCTTGCAAATAATTGCAAGAGATTTACTCGCAATTCCTATCTCCAATGTTGCTTCAGAATCTTCATTTAGTAC CGGATGACGAATTCTTACTCCTCATCGTAGTAGATTGCGCCCAAATACCGTAGAGGCATTAATGTGTCTCCAGGATTGGCAAAGGTGTGACATGAAAGGC TCTTCAAATTCAAAACTGGACATCATTGGGTGTGGTACAGTATTGGAAGATTTTGATGATTCAACTAGCCAATGTAGTGCTATGGAAGCGAATGATGTTA ATCATTGAAGATGATTCGGAAACTGCAACAATTGATGCAAGTCCATGATTGATGATAAGGAAGATGCATTAGGCTTATGATTTCAATTTTCATTATTCTG GACCTTTGATATAATTTGGTACTGATATGGTTTGTATGCTTAAATCATTTATGTTGCAACCAGGACCTTTGATTGAATACTTGTATGCTTAAATCATTAA TATTACTTGTTTGTTTAAAAAATAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_193030; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_350758
Blastp | Zinc finger BED domain-containing protein DAYSLEEPER from Arabidopsis with 30.29% of identity |
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Blastx | Zinc finger BED domain-containing protein RICESLEEPER 2 from Oryza sativa with 33.41% of identity |
Eggnog | zinc finger(ENOG41115TD) |
Kegg | Link to kegg annotations (AT3G42170) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_020979299.1) |
Pfam | BED zinc finger (PF02892.14) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |