Ll_transcript_349154

• Id Trinity: TRINITY_DN52477_c1_g1_i9
• Name Transcript: Ll_transcript_349154
• Sequence: CATATGCTCCTAATTTGACTTCATATGCTATTGTTTCTCTTGATCTAGGGAAAGAATCATGTCAAGAACTATTGCAGCCTGATTATGGAGAAGTGAATGT GCTTAGTTTCAGTTTAGGGGTATTAAAGAACTGTTTGAGCATCATTGTTCATTATGAAGAAGGTTTTTCGGATGTTTGGCTTATGAATGATTATGGAAAG AAAGAGTCTTGGACTAAATTTCTTTGTCTTCCTTTCTTGGGGAGTCCTCATGTTTTTCCACATGGGAAGGTGATTTGCATTTATGGGGATGAAGTATTGC TTCAGTTCAACTCTGACTTATCCATTTACAATTTCAGAAATGGAACTTTTAAGTTTCCTGAGATTCCAGACTTCTGTCGTTGGCCGGATCCACAGATCTA TGTTGAGAGTTTGATATCACCTTGTTCTTAAACATTAGGATGTATGGGTAGATATTATGCTACGTTACTTGTAGAAATAAATGTGCCTTATATGTTTGAT GCTTCCATTTATGTTGTGGATACAATGTTTGTTTTCATTACTGTTCAGTCCCTAGATCTTGTTAATCAATAATGAAGAGTATATTTTGGGTTTAATTATG TGTATGAGATTCATTGTTGCATTGATTTTTTTGTATTACTTATTAAGTAGTTTACAATCATGTATTGCATCAGAGGTTATCATTGTAGAATCTTAGTATC CTGACTTGTGTTTCTAACTTTTGAGTAACAAGTATCAAAATAGGATTATGCTTTCAAACAAGCCATAATCACTCATCACTTCAAATAACAGAAGCTACTA TATGATAAGCATTACAACAAACAACCAATATTATTAGGACAAGCAAACATGCTACACATAATAACAAATTATCCTAAGTCCACAATTATTAATTAGGAAG TGGAGACATTGAAAATGATGTACTACATGTCCATCTTATGATAGAATGAACTTTTCTTCTCATTCTTGACTCATGTCTTTTCCTCAATAAACTTTTGAGT GGCTCACTGTTGAAATTGTAGAAGTTGAAGGCATTTGAGTGAAGAAACCTTGAGAGAAAGAGATGAAGATTGAATGTCTCTGCTGTATTGATTGAGGAGA AAAAGAAAGAGAAAAGTAAAGGGAGAGAGAGGAAAGAATTGAAAAGTATACATGTATCTTATTATGTTTAAAATGAATGAATACAAAGAATATAAATGCC CTTTATTTATAAGAGCAGAATCAGAAAACTAAGAAATGAATTTAGACAATAAAGTGAGCCAAATACATTGAAAACAGAAAACAGAAAGAAAAGATTAGTA GTTACAAAAACAGTTAACTAAACAGTTACTGAAAACAATTGCTGAAAACTAACTACTCTGATATTCCCCCTAAATCCGGAGCCACAGTGAGAACGTTGAG CAGAGGGCAGATCAGTAACACGAAGCTTGTCCCGAAGTAGAGTGAAACGAGAAGTGGAGAGAGGTTTGGTGACAGAAGTGACAAACTGTAACCCCCGAAG AAGACTTTGAATCCAGATTACCTCACTAGCAGCAACAGCCAGGCTACGATATTCAGCTTCTGTTGTGGACCGAGCAACCCAGTCTTGCTTCTTTGACCAC CAAGAGACTAGATTAGTTCCAAGATAAACACACGCCCCAGAGGTGGACTTGCGATCATCAGGGTCCGAAGCCCAATCAGCATCACAGTAAGCAAAAAGAG GAAGAGAGAGATGAGGAGATGCGGGTCGTAAGAGCAAACCATGAGAGATAGTTTCTTGTAGGTACCGCAAAATCCGTTTGAGAGCTTTCCAATGTTCCTT TTGAGGTTGTGAAAGAAACTAACACACTTTACTGATACTATAAGAAATCTTTGGCCTGGTAATAGTGATGTATTGTAGAGCACCAGCAAGAGACCTATAC AATTTACCATCCTCTAAGAGATTGCTCCCATGTTTAGTAAGCTTGCATCCACCAATCACTGGAGTAGGCAAACTCTTCATATTATCCAGATGATACTTTT GTAACAGGTCCTTGACATACTTGGACTGAGTGAGAAGAAGAGAACCATTTGTGAGCTTCTGAATTTCGATCCCAAAAAAATAATCCAAAGCACCAAGATC TTTAAGGGTAAAAGCTAAATTCATCTTTTCAATAAGTTGCTTGATCAAAGTGGGAGAGGAACCTGTGACTATAATATCATCAACATAGCACAATACAAAC AACTTGTGTGTAGGAATAACCAAGAGAAAAAGAGAGTGATCACACCTACATTTACGAAAACCAAAAGACAGAAGAGTTCCTACTAACTTATCAAACCATG CCCTGGGAGCTTGCTTGAGACCATAAATTGCTTTGTGCAACTTGCAGACCAAAGTAGTATTAGACGATTTAAAACCTTCTGGTTGTTGCATGTACACTAT CTCCTCAAGGATGCCATTCAGGAAAGCATTATTGACATCAATTTGTTGAACGTCCCATCCATAGGTTAGAGCCAAAGTTAGAACTATCCTTACAGAAGCA GGTCTCACAACAGGAGAAAAAGTCTCATTGTAATCACATCCCGGTTTTTGATGGAACCCTTTAGCTACTAACCGAGCTTTGTATTTGTTAATCGTACCGT CAGGATTCTCTTTGACTTTAAACACTCACTTACACCCAATAGCTTCTCTATCTGCAGGAAGTGTAACCAAACTCCAAGTATTATTCTTCATCAAAGCATC AAATTCAGTTTCCATGGCATTCCGCCATTCTGGAATAGTCAAGGCAATCTTTGCTGATTTAGGCTCAACATAGGCAGTAGAACACTAGGAGATGAAAGAG TCCTAGAACCAACTGTTTTTGACCGAGTAAGCATGGGATGAGTATCAACCGGTAACACTTGACTAGGACCAGGTTCCACCAAGGTGGGAGAGGCAGGCGG AGAAACCAAAGAACCAGGAGAAGATGGAGAGGAAAAAGTATGGGAAGCCGTGGGTGAGACAGAAGAATCAGATGTGTTACTCAAGGGACGGGATGGAGAC AAAACAAAGAGAGGTATGCACAAATTATTACTAGAGTCGTTGTTGGGTGTAAAGTTAGGAGAAACCGAGAAAGGAAATTTGGCTTCATTAAACACAACAT CACGCGAGATATAGATTCTACCCTTAGAAGAAAGACACTTATATCCTTTGTGATGTGACGAATACCCTAAGAAAGTACACTCTTCCGACCTATAGTGTAA TTTGTGCTTAGTATAAGGCCATAAGCACGGAAAACATGAACACCCAAACACTTTTAGAAAGTTATAGTCGGGAGGAGATGTGTATAGACAAGTGTAAGGC ACTTTACCCTCAATAGACTGACTGGGAATCCTATTTATGAGATAAACAGCTGCGTCAAAAGCATATTCCCAATATGATAAAGGAAGAGAAGCTTGGGCAA GTAATGTGAGCCTCATTTCAACAATATGACGATGCTTCCTTTCGACCACCCCATTTTGATGATGAGTATGGGGACATATAACTCTATGATGAATACCAGA GATGCTAAAAGAGAAGCAAAAGGGTGAAACTCCCCATCCCAATCTGTTTGGACAGATTTTAAAACAGCACTAAATTGAACCCTAACCATGGTGTGAAAAT GTTTAAAAAGGTTAAGGGCCTCAGATTTCAGTTTTAAAGGGAAAAGCCAAGTGTATCTAATACATGAGTCAACAAACGATATATAGTACTTATAGCCCGA AACTGGCATAACTGCTGCAGGTCTCCAAAGATCAATAAACACCAACTCAAAGGGATGAGAATAAACTGTATGTGATGAATGTGAAGGTAAACAATGTGAC TTTCCCAAAGCACAAGCAGTACAAAAATCAGTTACTGTTTTATTAATGAGAGGAAGTTTACAATGTTTCAATATATTTTTTACAACCTCTTTATGTGGGT GACCTAAACGACAATGCCATAACGAAAACATATGTGTATTGCTAGGATCTGTACGAACAGTAGAAACAGAAAAATTACAACACGAAGTTACATCAAGACT ACCAGTACTTGAGGCAGAAAACCGTGAGGCTGGAAGAGGTAGACTAGTGAAGACATACAACCCATCAGGACCGAGAGTGCCTTCTAGAAGTAAGGTACCA TCAACCTGAGATTTTACACAACAATAGTGAGAGTGAAATTCAAAATAAACATAGTTGTTCTTGGTGATAAAAGGAACCAAAAGTAAATTGTTAAGGGTGA GAATGTGTGCGGGATCATTAGGAGAATAAAATGCAGATGTACCAATACTTGTAATAGGAGCACCTGTACCATTACCCATAACAATGTTATCAGAACCCGG AAGGCTGGTAGAATGCATCATATTTGTTGGATCAGCCGTAACATGATGTGTGGCTCCTGAATCGGGATACCATTACCGAGAATTATAAGCATGTGGTCCT TGTCGAGGCTGTTGTCCATGTGTAGGATTAAAGGAATCACAGTAGGAATGTGCAGGGGACTAGGAGCAATCCCTAGAATAGAGGGTTGATGATATCCAAG ATGAGACATTGGAACAACACTATATGGAACAGTTCTGGGTGCTGTAAAGTGTTGCTGAAACGAGTTGGGAGGACGAAAAACAGTCCCTGGGAGTGATGCA CATCTGATCGAAGCAAACTGAGGAGAAGAAGAAACCTGTGACTGCATAACTAAATCAAAACGATACCAGCACTGTAAAGCTTCATGACCAGTTTTGGAGC AAAGTTGGCACCGAACAGAACTCTGACCACGTCCAAACCGATTGCTTATGCCATGACTATAATAATTGCCATGTCCGCGAGTAGAAGGAGGTGCGCCGGT TGGAAAGAACTCTGCTGGATGCTGCAACTGTTGTGCGGGAAATCCAGATTCAGCGACATATTCAGAACGCTGAAGCTGTCCAGCAGTGGATAATTGGTTC TTGGAGGTGGAGTGAGCCACATTAACGGAAAAAACCTCAGTAGAAGGCGGATGAATGCGTTCCAGATACGTCTCATGTGCCATTAACAGAGATTCAAGTT GAATAAAAGAGCAAAACTCAGGACGGTTATTAATCGTGGTAACAAAGGACTCGTATTCAGACGGGAGTCCTTCAAGAACCAAACGAACCTGCTCTCGGCC AGAAACGACCTCACCAACGGCAGCAAGAGAGTGAACCAATGCTTTTATACGAGTAACGAACTCAGTTACAGACTGAGTGCCCTTCTTGATGGTGCGAAGC TCAGACAAAAGAAGCTGACTCCTAGCACGAATCAGGGAATCGAAAAAAGTGTGAATTTCGTCCCAAATCTGCCAAGCGTGACGGAGCCCTAGAACACGCA ATTGAATCGATTCAGAGAAAGATTGCAGCAACCAGGAGACCAAATGCTGATCTTGTTCCTCCCATTGAAGAAAAGTAGGATTCAACCGATCACACTCACG GTCCTCCTCAGAAAGAAACCGAAGGGGAACCTGTGGATTAACAACAAACCTTTCCAGCCGATGTGAAGCAAGAACAGCTTCGACTTGTTGCTTCCAAATG AAATAATTCTTCTCGGAAAGCTTGACGGAGATACTATGAGAGAATGTGATGGTTGAAGGCGGAACCACCGACGTAGTGTTAGAAATTTATAATTTCTAAT TAAGGTGGGCATCATATGTTTAATACAATTGTATCCGCTATTTATTCTCGGGGTTATTAAACAG
• Tissue: pods
• Gene name: LI_gene_193047;
• Additional information: details;

Expression of Ll_transcript_349154

FPKM

• PAB: 0.2
• PNAB: 1.7
• PS1: 1.4
• PS2: 1.6
• PS3: 1.7
• PW1: 1.3
• PW2: 1.3
• PW3: 1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_349154

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 28.03% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 40% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019464137.1)
• Pfam: GAG-pre-integrase domain (PF13976.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;