Ll_transcript_350038

• Id Trinity: TRINITY_DN52485_c1_g1_i9
• Name Transcript: Ll_transcript_350038
• Sequence: GTGCTTTGGATAGATTGAGAAAGTCAGTGCATCTTGAGAGGCTAGCTTTTTATCATGATTCTGACAGGCTTCCTTGGGAGATTCATAAGAGATGGGAGGA TATTAATCCAAATGAATGGATTGAGATATTTGAAGAGGGCATAAATGAACCCAATGATGATCATAAGTTGGTGTCTAAGTGGGCTATGAACCGTACCTAC TTGGTTTATCCTATCAATGCAGTGCTACAGTATCATCGTCTCGGAAACCAAGAACGAATAAATCCAGAAATTCCATTCGAGAAAGTGTCCCTTGTCCTTG CAGATGTCTCTCTTACTCTAACTGAGGCTCAGTATCATGATTGGATTAAACTCCTGGAAGTTGTTTCAAGGTACAAGATATATATGGAAGTTTCTCATTT GCGACCGGTAGTTCCTATTTCAAAGGCTCCTTATTTATGGTGGCAGTATGCTGCACAAGCTACGTTGCAGAAGCAGAAGATGTGTTATCGCTTGTCTTGG GACCAAATTCGGGATCTTTGTCAGCGTCGGCGGCGATATATTCACTTGTATGTGGCTTCTCTTCAACATTCCGCACATGTTAACCTGACAGAAATCAGAG AAATAGAAAAGGACCTTGATTCAAAAGTGATTCTTCTTTGGAGGCTACTAGCTCATGCCAAGGTTGAATCTGTGAAATCAAAGGCAGCAGCTGAAGAAAG GAGGATGAAGAAAAAGAGCTGGTTTTCATTTGGTTGGGGTGCTGACACAGAAGAGGCTTCTTTTGATGACACTTCTGAGGGGATACATCTTAAAGAAGAA AAATTGACGAAAGAGGAATGGCAAGCGATCAATCAGTTATTAAGTTACCAGCCTGAAGAGGAGTCGATTGTACGCTCTGCAAAAGATATGCAGAGTATGG TTCAGTTTCTGGTAACTGTATCTATTGGTCAGGCTGCTGCCAGGATTATCAGTGTGAATCAGATGGAAATTGCCTGTATACGATTTGAGCAACTTCAAGT GTCAACTAAGTTTAAGCATCGCAGTATTTACTGTGACGTGTTACTAAAATTTTATGGTTTATCTTCTCCTGAAGGTTCGCTTGCCCAGAGTGTCTATAGT GAGAAGAAGGTGAATGCATTAGTGGCCAGTTTTGTGCACTTACCAATTGGGGAGAATATTGACTGGAGATTGTCTGCTACAATTGCTCCCTGCCATGTTA CGGTTTTGACTGAAAGTATTGATCGTGTCTTAGAGTTTGTGAAGCGAAGTAAGGCCGTCAGTCCTACTGTTACATTGGAGACAGCTACTGCCTTTCAGCT CAAGTTTGAGAAAGTGACTCGTAGAGCGCAGGAGCAATTTCAGATGGTTTTAGAGGAGCAAAGCAGATTTGCGTTTGACATTGATCTTGATGCACCAAAA GTCAGAGTTCCTCTAAGAACTAGTAGTTCAGACAGATGCGATAGTCATTTTCTTTTGGATTTTGGTCATTTTACACTACATACTGCGGAAAGCCAGTCTG ATGAGCGGAGACAGAATCTTTATTCTCGGTTTTACATAGCTGGACGAGATATTGCTGCCTTTTTTACAGACTGTGGCTCTGATTTTGGGAATTGCAGTTT AGTGAAACCAAATTATGACAATCAAATGATGAGCTCGCCCATTGTTGATAAAATTGAAAATGTATATTCTCTCATTGATAGGTGTGGAATGGCAGTACTT TTTAATCAGATTAAAATACCTCATCCAAGATACCCATCCACTCGTATTTCCATTCAAGTTCCAAACCTCAGCATTCACTTTTCATCAGAGAGATATTTCA GAATCATGGAACTACTGAACATTTTGTATGAGACTATGGAAACTTATAGTTTGTCTACAGCTGATAGTTTCGAAGCTAAACTCTATCCCTGGAGTCCTTC AGATCTCGCTGCTGATGGTAGAATCCTTGTTTGGAAGGGAATTGGCAATTCTGTTGCCACATGGCATCCTTGTTTCCTGGTCCTTTCTGGATCGTATCTT TATGTCTTTGAATCTGCAAAGTCTCAGAGTTACCAGCGATACTTAAGCATGGCTGGTAGGCAAGTCCTTGAGGTTCCCCCAACAAATATTGGTGGTTCCC CATTTTGCATTGCTGTAAGTGTCAGGGGAATGAATATTCAGAAGGCTCTAGAATCTTCTAGCACGTGGATTTTAGGCTTCCGAGAAGAAGAGGAGAAGGC TAGCTGGTTTAAAGGACTTGTACAAGCTACATATCAAGCTTCTGCTCCCCCATCAGTTAATGTGTTAAGTGGCAGAGAAGGTGATGCTGCTTCCTACAGT GTTCTTACTACTACAAATCTGAAAGCAGCTGACATTGTTATAAATGGGGCAGTGGTTGAAACTAAGGTGTTTATATATGGAAAGGTCGGAGATACAATTG ATGGGAAACATGATGAGTCTCTTATTCTTGAGATTGTTGTGGATGGGGGAAAGGTGAATGTCATTCTTGCAGATGGTGACTTGACAGTGAAGATGAAATT GCATTCTTTGAAAATTAAGGATGAACTTCTGGGTTGCCTATCTGGGGCTCCACGTTATCTAGCTGTTTCAGTCTTGAATAATGAAACTTTGTCTTCTTCC CCTGTCTCATTTGATTCACATGGGAAGGATGCACCATTTGGATTTCCTGACGATGATGATAGCTTTGTAGATGCATTATCTGAATTTATTTCTCAAGCAG ATGGAGGTCAGCAAGGACGGATGATGATTGCTACTGATTTTGAGTCTCTTGAAAACTTAATTCATGAAAAGGAAATTGAAAAGGGAAAGAACACTCCTCA TGAGATATATTTTGAAGCAGAGGGGAGTGATCATTCAAATTTTGTATCTGTCTCCTTCTCAACGAAGAGTTCAGGCTCACCCGATTACGATGGTGTAGAC ACACAGATGTCTGTTAGTATGTCCAGACTGGAATTTTTCTGCAACCGACCCACCATTGTGGCTTTGATAAGTTTTGGCTTGGATATGAGTTCTGGAAATA ATGTGACAAGTCATACAGACACTCTGGCAACTTCTCCAGAGGGACCTTTGGCGAAGAAGGAAAAGGCCGATGAAAAGGGCCGCGTTAAAGGGTTGCTAGG GTTTGGTAAAGAACGTATAATCTTTTATTTAAACATGAATGTGGATAGCGTAACTATTTTTCTTAACAAGGAAGATGATTCTCAACTTGCTACGTTGATA CAAGAAAGTTTCATAATGGATCTTAAGATTCACCCGAGTTCACTTTCTATTGATGGAACGTTGGGCAATTTTAGACTTTGTGATGCATCCCTTGGAACAG ACCAATGCTGGGATTGGCTTTGTGACTTGCGTAATCCTGGTGTTGATTCAATTATAAAGTTCAAATTTATTTCTTATAGTGCTGAAGACGATGACTATAA AGGATATGACTACAGCTTGCAGGGTCATCTCTCAGCTGTTCGCATTGTTTTCCTTTATAGATTTGTGCAAGAGATAACGGTGTACTTCATGGAACTCGCC TCTCCTCATACTGAAGAAGCAATCAAACTTGTTGATAAAGTTGGAGGATTTGAATGGTTGATTCAGAAATATGAAATAGATGGGGCTACTGCACTCAAGC TGGACCTCACACTTGACACGCCAATTATCGTTGTTCCAAGGAATTCAATCAGCAAAGAGTTAGTAAAGATCTGAATCACTTTGTTAAATGAAACACCAAT CTTATTATTCAATGGGCTTGTTGATATTTATAATGATATAGCTGGGTGAAAATGCATTGTCTTAATATTCACATAATTG
• Tissue: pods
• Gene name: LI_gene_193120;
• Additional information: details;

Expression of Ll_transcript_350038

FPKM

• PAB: 0.1
• PNAB: 0.2
• PS1: 0
• PS2: 0
• PS3: 0.1
• PW1: 0.2
• PW2: 0.1
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_350038

• Blastp: Putative vacuolar protein sorting-associated protein 13A from Dictyostelium with 21.4% of identity
• Blastx: Putative vacuolar protein sorting-associated protein 13A from Dictyostelium with 25.73% of identity
• Eggnog: Vacuolar Protein(COG5043)
• Kegg: Link to kegg annotations (DDB_G0286725)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019431161.1)
• Pfam: Vacuolar sorting-associated protein 13, N-terminal (PF16908.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;