Ll_transcript_349984

• Id Trinity: TRINITY_DN52492_c1_g1_i3
• Name Transcript: Ll_transcript_349984
• Sequence: ATAATAGTAAGAAATTGGTTAAGGATGAATGAAACATAACACAACACAAAAGAACAGAACACAAAAGGTTTGTCACGAGAAACGCAGATACGGTGAAAAT GTTGTTCTGTGAAGCATAAGCATGCAAAGCTAAATTCCATTTTAACCTCTTACCTTAACTTCTCTCTCTCAATTTCTCTTTGTCTCTTTCTCAATCTCTC TATCATTCTCATTCACCACTTTCACCAATACAATCGTTCATAACCACACAACCACAACCCGTGATCATTTCTTCATTGCTTCAAATTCATTGTCTTCCAC TTTCTTCATTCTCCATTTTCTCTCTCTGGGTACTTACTTCTATACAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGATATTGAAGAAGGGTGAAGGGGG GTCCTACTGCATAATTTTGGAGGAGGCATCAACAGTCTCTATCAATGATTTCGTTTTATTTTACTTAGTTACTATTACTCACCCATCTAATCACTATCAC TATCACACTTTGCACAATTAACTCTCTCTCTCTCTCTCTGGCTCTTATTCTTCACAAGGAGGATTTGGAATTAGTCATTGGTGGTGGCTCAAAAGCTCTG CTTTTTTTGGTCAGCTTCTTGGGCAAACCGGATCTCACTCTTATGAAGAGACCTTCAACTCTGGTGTATGTGATTCTTTTACTTGCATTGTTCAGTTGTA CCCCATGGATAGTGTGGAGCAGCTCACTCTGCCATGAAGCAAGCTCGGAGGTTGTTCGGCCTCACAGCGTCAGTATTACCGACTTTGGAGCAGTGGGCGA TGGGGTCACACTCAATACAAAAGCATTTCAGAATGCCATCTTCTACCTAAATTCATTTTCAGACAAAGGTGGAGCAAAGCTTTTTGTCCCGGCTGGCCAG TGGCTGACAGGAAGTTTTGATCTCATCAGCCATCTAACTTTGTCATTGGATAAGGATGCAGTAATTCTCGGATCAACGAACACTGATGATTGGCCAATTG TGGATCCTCTACCATCGTATGGCCGAGGAAGGGAGTTGCCGGGTGGGAGGCATAAAAGCCTCATTTATGGGCAAAATTTAACTGATGTCATCATAACTGG TAATAATGGCACTATAGATGGTCAAGGAAGTATCTGGTGGAGCAGGTTTCAGAACAAAACATTGAACTATACGCGCCCCCATTTGGTTGAGTTGATAAAT TCAACCGGAATTCGCATTGCAAACTTAACTTTCAAGAATTCACCATTTTGGACTATCCACCCTGTATATTGCAGGTTTGTTTCCTTCAGAAGGATTGAGT TTATATTTTCTTCCTTATTTACTGCGCTTCGTGTACTTCCATTCCCATTTTAAAACTGTGGATAGTGAAGCTTTCATGATTAGGGGGGAGATTTGAGACT GTTTTTCTGAATGAACAGCCATGTTACAGTTCAGAATGTCACAATCCTTGCTCCTCTCAGTTCACCGAACACAGACGGAATTGATCCAGACTCTTCAGAC AATGTATGCATCGAAGACTGTTACATAAGCACTGGTGATGATTTGATTTCCATCAAAAGTGGGTGGGACGAATATGGGATTTCATTCGGTCGTCCCAGTA CGAACATTATTATTCACAGGCTCGTCGGGCAAACAACAAGTGCAGGGATTGCTATTGGAAGTGAGATGTCTGGAGGTGTATCTGATGTCCATGCAGAAGA CATTCAGATTTTTAATTCACGTAGTGCAGTCAGAATAAAAACTTCTCCTGGCAGGGGCGGTTATATAAGAAACGTCTATATCGCTAACTTGACCTTGGCT AATGTAGATATTGCTATTAGGTTCAGCGGTTTATACGGAGAACATCCAGATGATGCTTATGACCCAGATGCTCTACCTTTAATAGAAAGGATTACTGTCA CAGATGTGATTGGGGAAAATGTCAACCGCGCAGGCCTTTTACAGGGTATACAAGGTGATCATTTTATCAATATCTGCCTATTAAACATCACCCTTAGTGT GAGCAAAAAGGTTCCATGGAACTGCTCTTATGTTAAAGGTTACTCTGACTTGGTTTCTCCGAAAATTTGTGAGCCTCTGAAAGAGAGAATATTCCCGGAG CATTCTTCAGACTGTTACTATTTATCAAATCCCTTGAAGAGTTCGAGTAATCGTAATAAGGGTGGTTGGTTGATGTCTTGGTAAATTATGGAGTTTCAAG TATTCTGCTATATAGCTGAAATTTGATTGGTGCATCACTTCAAGAGGACAAAATTTACCTGGCATAAGCAGCTGAGTAGTTTCTGATTTTAAATATGGGG ATTTGTAGCTCTCTTACATTGTTCACAGACTTCTCTCTGTGTCTGTGACTTGGTCTTTAGCCCTCGTGTATTCTAACTTTTAAATGCATCTACTTGTGTG TTTCATTGAGTTTTCATTTATTTTCCATTGTATATGTGGGCAGATATAAAAAATAAGCGGGATTCCGCTGATTTATGTGATGGAATAGATCCTTCACAGC AAACTCTGCTCAAAACAAGTAAAATATCAGTTGTGTTGTTGCCTTGTTGACGTTTTCCCGTAACGGATGTAGACGTTAATCTCCAAGGTTTCATGTGTGC TGTATAGCAGTTTTATCAACATCTTTACTGCATCTTAGTATCATATAATGTTTCTGCTCCACTATGTTGGCGTATGGAATTTATTTCAAATTGCATATGG AATTTATGGATTGGAATAAATGTGCGTGTGTGCTGATTGGTGAATGCAACTTAATCACATATAGAATCATAAATGAAAGCATGGTTTTGTTATTTTGAAG TTCTTGTAATTTGTTTATTGCCTGAGTGTTGAAGTGTTTGCAGAATGTACTTTCTACTAGAAAAATCAACTCTCTTGTTATAGGCTGTAATTAT
• Tissue: pods
• Gene name: LI_gene_193184;
• Additional information: details;

Expression of Ll_transcript_349984

FPKM

• PAB: 0.4
• PNAB: 2.2
• PS1: 1.2
• PS2: 1.8
• PS3: 1.8
• PW1: 0.7
• PW2: 1.1
• PW3: 1.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_349984

• Blastp: Probable polygalacturonase from Vitis with 57.89% of identity
• Blastx: Probable polygalacturonase from Vitis with 47.77% of identity
• Eggnog: Glycoside hydrolase family 28(COG5434)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019427919.1)
• Pfam: Pectate lyase superfamily protein (PF12708.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;