Ll_transcript_349989

• Id Trinity: TRINITY_DN52492_c1_g1_i6
• Name Transcript: Ll_transcript_349989
• Sequence: GAATTTGGTGCAGTTGGGGATGGAATTACTCTAAACACAAAAACATTTCAAAATGCCATCTTCTATTTAAACTCATTTGCAGACAAAGGTGGAGCAAAGC TTTTTGTTCCGGCGGGTCGGTGGCTAACTGGTAGTTTTGATCTCATCAGCCATCTAACTTTGTCCTTGGACAAGGATGCAGTAATTCTTGGATCAACAGA TATCGACGATTGGCCAGTTGTTGATCCTCTACCATCATATGGGCGAGGACGGGAAATGCCTGGTGGAAGGCATATGAGCCTTATTTACGGGCGAAATTTG ACTGATGTCGTCATTACAGGTAATAATGGAACTATTGATGGTCAAGGGAGTATATGGTGGAACAAATTTAGGAACAAAACGTTGGATTATACGCGTCCGC ATTTGGTAGAATTGCTGAATTCAACAGGAGTTCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACTATTCATCCTGTATATTGCAGGTTGGT ACCCTACATAAGGATTGAGTATATGATTAGTTCCTTATTTTCTGTACTTCAAGTACTTCCATTAGAATTTTAGACTGTTTTTTTCCGGATGAACAGCCAA GTTACGATTCAGAATGTCACCATCCTCGCGCCTCTTGATTCGCCAAACACGGATGGGATTGATCCAGGTGAAATTTCTTCCTTGGGCTGGAGTGCCATAC ACTCAAAATTTTACAAGTATCCTAAGGGCATGTTTGTTTAAAAAACTTAATTAAATGCCTATCACATGAAAGCTTATGACATTCCAATAAGCTCTATTTA GCTTAATACATTAAGCTAAAAAGGTCTTATAGGAAGAACATAAACAATTTCAACAAGATCTTGCAATCATATGCTTAAGTGCTTTCATGATAACATAAAC CGAATAAGCCTTCTATAAACTCTTCTGATCGCTTCGTAGATTAACTTCCGAAAATTTACAGTTTCATGTTGTTTTAAAGGGAAATTTTCATTGGAGCAAC ACAAAAAGACAGAAAAAATCTAGACATGTGCATATATCAAAGGAATATCATAGGCTTAAAGCAATGTATCTCTTAATCAATGATTCTAATAATGTCCTTG CAGCATTTTTTAGAGATTGAAAATTCTCATATATACTTTTCAATTGTGTTCAGACTCTTCAGACCATGTATGTATTGAAGACTGTTACATAAGCACAGGT GATGATCTGATTGCTATAAAAAGTGGTTGGGATGAGTACGGCATCGCATTCAGTCGACCCAGCACAAACATTATCATCCATAGGCTCACAGGGAAAACTC AAACAAGTGCAGGGATTGCAATTGGAAGTGAAATGTCTGGTGGTATATCAGAAGTCCATGCCGAAAACATTCACTTCCATGATTCATATAACGCGATCCG AATAAAAACATCTCCCGGAAGAGGCGGTTATGTTAGAAACATCTATGTCTCAAACATGTCCTTGGTTAATGTTGACATTGCTATAAGATTCACTGGCTTA TATGGTGACCACCCAGATGAATATTATGACCCAAATGCACTACCTATAATAGAAAAGATAACAATTGAGGATGTTATAGGACAAAACATAAAACATGGTG GTATTATAGAAGGTATAAAAGGTGACAACTTTATCAACATATGTCTATCAAACATTATCCTTAATGTGACATCAAGATATGCATGGAACTGTTCCTATGT TGAAGGGTACTCTGATTTGGTTGTGCCACAAGCTTGTGAGTCTCTTAAGGGAAGAATATTCAGTGATCATTGTTCAGATTGTTACTATTTATCAAAGTGC ATAGCAAGTTGGAATAAGAGAAAAAGAGAAGGAGAAATTTCAAGTGATGTAAGAATTTTGAGTGAAGTTGGTGATTTTGTTCTAGTGTTCCATCTGAAGA GAGATAGTTAGAGATGATTTTTGTTGTAACTTGTGTGTGGTAACAAATAAGTGAGTGATTTATTAGAAATAGTTGCAAGTTTTTTTGTCTTTCATTTTTT GCTTATTTAGCTACATGTTATGGATTTTGGAAAAGAAAAAAGATAATTTTTGTGTTTTCATTGATTCTAAG
• Tissue: pods
• Gene name: LI_gene_193184;
• Additional information: details;

Expression of Ll_transcript_349989

FPKM

• PAB: 0
• PNAB: 1.2
• PS1: 0.8
• PS2: 0.5
• PS3: 0.2
• PW1: 0.4
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_349989

• Blastp: Probable polygalacturonase from Vitis with 42.55% of identity
• Blastx: Probable polygalacturonase from Vitis with 53.15% of identity
• Eggnog: Glycoside hydrolase family 28(COG5434)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019440660.1)
• Pfam: Glycosyl hydrolases family 28 (PF00295.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;