| Id Trinity | TRINITY_DN52498_c3_g2_i11 |
|---|---|
| Name Transcript | Ll_transcript_348373 |
| Sequence | CCTCCGTTTAAGTTCTTGCTCTATGGTAGAACTGGGTGGATTGGGGGTTTGCTGGGAAAATTGTGTCAAAAGCAAGGAATTCCATATGAATATGGAAAAG GGCGTCTGGAGGATCGTACCTCACTTATGGCTGATCTTCAGAATGTGAAACCAACCCATGTTTTTAATGCTGCTGGAGTTACCGGCAGACCCAATGTTGA TTGGTGTGAATCTCATAAAACAGAAACCATCCGCACTAATGTTGCTGGTACCCTAACACTGGCTGATGTCTGCAGAGAACAAGGGATTTTGATGATAAAT TATGCCACTGGGTGCATATTTGAGTATGATGCAGCTCATCCAGAGGGTTCTGGCATTGGTTTTAAGGAGGAAGACAAACCCAACTTCATGGGTTCTTTCT ATTCCAAGACGAAGGCCATGGTTGAGGAGCTATTGAGAGAATATGACAATGTATGCACCCTCAGGGTTCGCATGCCAATTTCATCAGATCTGAGCAATCC ACGCAATTTCATTACCAAGATTTCTCGCTATAACAAAGTAGTTAACATTCCAAACAGCATGACTATTTTGGACGAACTTCTTCCAATTTCAATCGAGATG GCAAAGAGGAACCTGAGGGGCATATGGAACTTCACAAATCCGGGGGCTGTTAGCCATAATGAGATTCTTGAGATGTACAGAGATTACATTGATCCCAGCT TCAAGTGGAATAACTTCACACTCGAAGAGCAAGCCAAGGTAATAGTTGCAGCAAGAAGCAACAATGAGATGGATGCCTCCAAATTGAAGAATGAGTTTCC GGAGTTACTTTCCATCAAGGAATCTCTGGCCAAGTTTGTCTTTGAGCCAAACAAGAAAACTACTTAAAAATATTAAGGCACTTACATTCTTAAGAGACAT CAGTTATTCTCTGCATTTTTGTGTCTGGCTACACAGATCACTGGTTGTTTAATTAGTAGCTCCATCTAGTTATTTTAAAGGGTGACAAGTATTATCATTG ATGTTAGGTTTGGTTCCTAAATTTTCATTGCTACAGCTTTATTATAGTTTACTAGTGTGTGCTCTTTTAAGCTTGTAGTGAGCAACTTTTGCATCCTGCA AGACATTTATTCTTTTATGGTTTATATATATCCCTTTTGTGGGTTATGCTTGTTTTGTATTTGCATTTCTATATGCAATTGAAAGCATGCTACGGATATA TTCATTATATTTCATCCAGTTAAAGAAGTTAGTGTGATGTAAACACTTGAAGTTGTGTGCAAAATACAGATATGATAACAGTGGGGTTTTTGGTCCTTGA TAAAAATCTAAACTAGCTTCATGTTTATTGCAGTCTTCTTCTGTATGCCCAATTTGGGTGTCAATGGTGTGAAATATTCAAGTGAGGCTTGAAAGAAAAA ATACAAACTTGAACTTGCTTTCAATACAAACTTTGTGGGAGCACCTC BLAST |
| Tissue | pods |
| Gene name | LI_gene_193233; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_348373
| Blastp | Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 from Arabidopsis with 87.11% of identity |
|---|---|
| Blastx | Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 from Arabidopsis with 86.97% of identity |
| Eggnog | dTDP-glucose 4-6-dehydratase(COG1088) |
| Kegg | Link to kegg annotations (AT1G78570) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453523.1) |
| Pfam | RmlD substrate binding domain (PF04321.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |