| Id Trinity | TRINITY_DN52515_c1_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_506105 |
| Sequence | AGAAAAACGAGTGTAACAGCTATATATCATCTTCATACGTTTACAATGGGCTAGTTTCTCAAATCAATTTTTTTTGAGAATTTTGGTTAATCCAATTAGG GTTTCCAAAAGTGTTCTTCTTTTTATATTTTACTATAAATTCATAATCGAATTAGCTTTTTCTCTTATCGGAATCAACAACGCTGGGGAGTGAAGAATCT GATTTAGGTCCTCGCTCTCTTTTTTTCTTCTCTCGCTTTTGGAACTCTCTTATGAACGATAACATGGAAGTCGATTTACCCTCTGATTCTCTATCACTCA AGCCCCGTGATCGAATTATTAGGAGGCTTGCTCAGTTTGGAGTTCCTGAGGAGCAGCTTGACCAGCCTGGTTTGGTTGCTTTTGTTAAGGATAAGAGGGA GCTGATACCTGAGCTGGTGTCTGTCATATTGCCTACAGATGTGGAAGTGGGTGAAGCATTGCCAAATTCTAAGTCGGGCTCGAAGAAATTGCCTTTGGGT CTTACTATGAAGAAGACTTTCCGTCAGAGCATGTTGTGGTTGCAGTGGTTGATGTTTGAGGGTGACCCAGGTGCTGCCCTGAAAGGCCTTTCCGAGATGT CTGTTGGGCAGAGGGGTGTGTGTGGGGCAGTTTGGGGACATAATGATATAGCTTACAGGTGCAGGACATGTGAACATGATCCAACTTGTGCAATTTGTGT TCCTTGTTTTGAGAACGGGGAGCACAAGGGCCACGATTACAGTGTTATATACACTGGTGGTGGGTGTTGTGATTGTGGGGATGTGACAGCATGGAAGCGT GAGGGTTTCTGCTCGAAGCATAAGGGTGTCGAGCAGGTACAACCCCTTCCAGAGGACTTGTCAAAATCCGTTGCGCCTGTGCTTGGTTCCCTGTTTATTT GTTGGAATGACAGACTAAAGCTTGCGAGCGATTCTGCAATGTCCGCAGAAAGAAAGAAGGCTGCAAATGAACTAACTTTTGCTGTAGTTGATATGCTTTT AGAATTTTGCAAGCATAGTGAGAGTTTGCTCATTTTTGTTGCTAGGTCATTGTTCTCTTGTACTGATTTATTGAACATTCTGGTGAGAGCTGAAAGGTTT TTAAGTGATGTTGTTATAAGGAAACTCCATGAGCTACTCCTGAAGTTGTTGGGAGAACCTAATTATAAGTACGAGTTTGCCAAGGTTTTTCTCGCTTACT ATCCAACTGTTATAAATGAAGCCATAGAAGAGTTCAGTGACAATCCTCTGAAGAAGTACCCACTACTTTGCATGTTCTCTGTGCAAATACTTACAGTGCC CACCCTCACCCTACGTCTAGTGAAGGAAATCGACCTACTAACCATGCTGTTGGGATGTTTTGAAAAAATTATAAATTCTTGTGCTGAAGATGGACACTTG CAGATTTCCAGGTGGTCAAATTTATATGATACAACAATACGTGTTGTTGAAGATATTCGTTTTGTTATGAGCCATGTGGTAGTGCCCAAATATGTAACCA ATAACCATAAAGATATCTCAAGAATGTGGTTGAGACTCCTGTCCATTGTGCAAGGGATGAGCCCGCAAAAGAGAGAAACAGGTCAGCATGTAGAAGAAGA AAATGAGAATGTCCACTTGCCTTTTGTTTTAGACCACTCTATTGCAAATATTCATTCTCTATTAGTGGATGGGGCATTTTCTGATTCTAGCAAGGGAGAG ATGGAGGATGAAATTGTTTCGAGCTCAAAAACACATGAATCAGATGATGGAGATAACCTAAGACATGCGAAGGTAGGGAGGCTATCCGAAGAAAGCTCTG CATGTTTTGTGACCAGTAGGAACAGTGCCTTTTCTTCACCAGAGGTTCCTGAGACAAATTCCAATGCCTCTTCTCATCTTCATATTCCACATCCTGTCAC GTGGTTGATATATGAGTGTTTAAGGACTATTGAGCATTGGCTGGGAGTTGAGAGTAACCCAGATGCACTTCCTAACAAGTTTAACAGTGGTAGTGTCAAT GATGGCAATTTTTCAGCATTTAAGAGAACAATTTCTAATTTCAGAAGAGGTAAATATACTTTCGGTAAGCTTGCAAGTTCAAGTGGTGGCTTGGACATGA GTAAGAATGCATTGAAGGATGGTAGTGTGAAAGCAGATGGTGAAATTAATTCAGAAAACAGTGGCACTCGTCTTGGTTTTGATGATAATGCAATGGATGA GGATTTTCCCACAGAATTAGATGGTCTGCGTATTCTATCATTGCCTGATTGGCCAAAGATTGTCTATGATGTTAGTTCACAAGAAATATCTCTACATATT CCATTACATAGATTGCTATCCATGCTGTTACAAAAGGCACTGAGAAGATATTTTAATGACTCTCAAGTGCCAGATGTGACTGATGTTTGCTTTACCAACT CATTGTCAACAATCTACACTGATTTCTTTGGACTTGCTTTACATGGAAGTCATCCTTATGGTTTCTCTGCCTTTATAATGGAGCATCCACTGCGGATAAG AGTATTTTGTGCTGAAGTTCATGCTGGAATGTGGCGAAAAAATGGAGATGCTGCTTTACTATCTTATGAATGGTACAGATCAGTTCGCTGGTCTGAACAA GGTCTGGAGCTTGATCTATTTCTTCTTCAGTGTTGTGCTGCATTGGCTCCAGAAGATGAATATGTCAGCAGAATTCTAGATCGCTTTGGATTGTCAAACT ACTTGTCTCTGAATCTTGAGCGGTCTAGCGAATATGAACCTGTTTTAGTCCAGGAAATGCTTACTCTTATTATTCAGATAGTAAAAGAAAGGCGCTTTTG TGGGCTAAATACTGCTGAAAGTTTGAAAAGAGAACTAATTTATAAGTTAGCCGTTGGAGATGCTACTCACAGTCAATTAGTGAAGTCCCTTCCTCGTGAT CTCTCCAAGTTTGAACAGCTTCAAGACATTTTGGATACTGTTGCTGTTTATTCTAATCCGTCTGGCTTTAATCAGGGTATGTATTCTCTGAGATGGCCAT TCTGGAAAGAATTGGATTTGTATCATCCACGATGGAACTCAAAGGATTTACAAGTTGCCGAAGAAAGATACGCACGCTTCTGTGGTGGCTCTGCATTAAC TACTCAGTTGCCCCAATGGACCAAAATTCATCCTCCCCTGAAGGGGATAGCTGGAATAGCCACCTGCAAAGTTGTTTTACAGATAATCCGTGCCGTCCTA TTTTATGCTGTTTTCACTTTTAAATCTGCTGAATCTCGTGCTCCTGATGGTGTTCTCTTACCTGCACTGCATTTGCTATCATTATCATTAGATATATGTT TTCAGCATAAAGAATCTAGTGAGAATACATGTCATAGTGTAGCACAGACTCCTATAATTGCCTCCTCTCTAGAAATAATTGATGCAGATGCTTTTGACGG TGTTGGTGAACAAAGCTTGTTGTCACTCCTTGTTGTGTTGATGGAAATGAACAAGAAGGAGACTGTAGACAACTTTGTAGAAGCAGGTGGTTTCAGTGTA TCTGCTTTAATTGAAAGTTTACTGAAGAAATTTGCTGAAATTGACAACAGGTGCTTGACTAAGTTGCAAAAACTGGCCCCTGAAGTTGTGAGCAATATTT CTGGACGCAGTCCAACTAGAGACTCAGGAGTCTCATTTTCAGCTTCTGATAGTGAGAGACGCAAGGCAAAAGCTCGAGAGAGGCAGGCTGCAATAATGGA AAAGATGAGAGCCCAGCAAACAAATTTTTTGGCGAGCATTGATTCCACTGTTGACTCTAGTTCTCAAGTTGATCACGAAGAAGGTGACTTAGACACCACT GAAAACGAGGCTGAAGAATCTAAACAAGTTGTTTGCTCTCTATGCCATGACCACAGTTCAGAACATCCAATTTCATTTTTGGTCCTTCTTCAGAAATCTA GGCTTGTGAGGTCTGTTGACAGGGGTCCCCCATCATGGGCTCAAATTTGCCGATCAGATAAAGAACAGATGCCTACCACCACCAAGGTAACAGCTACATC GGCTATGAACTGGAACTCGGGTAGTTCAGGATCAACTTCATCTTCCCACTTAACTCAGTTAGTTCAGATTGCTGCCAATGAACTAGCTTCTAGTGGGCAT CCTGGGGAAGTTAGCGCTTTTCTGCAATATGTCAAGAATCAGTTCCCATCTTTGGGAAATTTTCAACTCCCAGACACATCTTATGATGAAAAAGACAAGA CACCATATACTTTTGACACTTTAGAACAGAGTATGTACTTCTCCATTCGTGACGAAATGCATGATTTTGCGTTGTCTTCAGATTTGATGAATGAGGATGA GAAATTTCCAACAACTGGAGGGAATTCAAATATTATAAAAGATACTGGATCTGTGGTGTCCGGGAAATGTTCAAGTGATCTTATGAGAGAGATGTTAGAA AAATCTTCTGCATCTGAAATTGCTTGTGAGAATGCTTCTGTTGAATCAGCATCACAGCATCAAGTATATGATGGATTTGGCCCTATAGATTGTGATGGAG TTCATCTTTCTTCATGTGGGCATGCAGTACATCAAGGGTGTCTTGACCGATATTTGTCTTCATTAAAAGAAAGATTTGTCAGAAGAATTGTTTTTGAAGG AGGACATATTGCTGACCCCGATCAGGGAGAGTTCCTCTGCCCAGTGTGTCGCCGACTTGTAAATTGTGTCATGCCGACTTTACCTGGAGAATTACAGAAG TCTTTTGAGCAGTCTATTGGCTTAAACATTGGTTCAATACATACAGAAGCCCCTTTAGGTGCATCGAGTGAAGTGACCTATTCACTCCGCCTTAAACAAG CTTTAAAGCTCTTGGAATCTGCTGCCAGTACAGTTGGGAAAGATAAATTCCTGAAAGCCATTCCTTTGCAGCAGATTGATAGAACTAGACCAAATCTTGA AACTTTCTCCCGGGTGCTTTCTAAAATGTATTTCCCAGGCAAACAAGATGAGTTATCAAGATTTGCCAGATTAAACCACTCAATGATGATGTGGGACACT CTTAAGTACTCTTTGATGTCAATGGAGATTGCTGCACGTTGTGGAAGGACTTCTTTGACTCCAAACTTTGCTCTTAGTGCCATGTATGATGAACTCAAAT CTTCGAGCGGCTTTATATTATCCTTGTTACTGAAACTTGTTCAAAAGACAGGGAGTAAGAACTCTCTTCATGTGCTTCAAAGATTCAGAGGTGTTCAGCT CTTTGCGGAATCAATTTGTTCAGGGATTTCCCTGCATCCTGCAAGTAATGACATGTCCGGTAGAGGTGATATGTTGTCTATCTTAAAGCGTATTGGAAAC GACATCTCAGACATCGACAAACGCTTTTGGAAACAGGCTTCAGATCCGATACTTGCTCATGACCCTTTCTCAACATTGATGTGGATTCTCTTTTGTCTAC CATACCCAATTTTGTCATGTGAAGAGTACTTGTTATCCCTTGTGCATGTTTTCTATATAGTAGCTGTAACCCAGGCCATAATTTTGTATTATGAGAAATC TCAGCCTAAACCAAGTGAATCAGGCCTTTCAAATTGCCTGATTACTGACATATATAAAGTTATCAGTGAATCTGGATGTCGTCAGCAGTGCTTTGTGTCA AACTATTTTGATCCTAATGTTGATATTAAAAATGTAATTAGGAGGTTTAGTTTCCCTTACTTGCGAAGATGTGCGTTGTTATGGAAAATACTATTTTCCT CTATCCCGGCACCTTTCTCTGATGAAGAAAATATGGTGGATAAATCATGGAATGCCCCAAATGACACAATGGACCGGGCTAATATTGAACTGTTTGAGGT CACCAAAATTGAAGAGCTTGAGCATATGTTTAAAATTCCCTCTCTTGATGTGGTTCTAAAGGATGAAGTTTCAAGATCTTCAGTTGCTATTTGGTGTCGT CGTTTTTTCAAGCAATCTGATTCTCATGGTATTCAGCGTAATTTGTATGTAACACCTGCAGTTCCATTTGAACTGATGAGATTACCAAATGTTTATCAGG ATCTTTTGAGGAGGTGTATCAAACAGCGATGCCCTGAATGTGAATCAATTGTTCATGAGCCTGCATTATGCCTGCTGTGTGGTAGATTGTGTTCTCCAAG TTGGAAATCATGCTGCAGGGCAAGTGGCTGTCAAACTCATGCAGCAACCTGTGGAGCTGGCACTGGAGTGTTTCTGTTGATTAGGAGAACAACAATCCTA CTACAGAGATCTGCACGTCAGGCTCCCTGGCCTTCTCCCTATCTGGATGCTTTTGGTGAGGAGGATTCCGAGATGAGTCGGGGCAAGCCTCTTTACCTGA ATGAGGAACGTTATGCTGCTCTGACCTATATGGTTGCTTCTCATGGTCTTGATCGTAGTTCCAAGGTTCTTGGCCAGACTACTCTCGGTAACTTCTTCCT GATTTAGTTCAACATTTACATGTTGAGTAATAATGTCAAGAAATTTAGTGAACAGATCTCCGGAAGGTCGGAATTGGTTCTGGAAATGCTAATGTATTAT GCATATATATGACTAATAAAAAAATCCTAGTCCAAACTGTCTGTCATTCAGGTTTGCATGCTATTGATACAGTAGCTGCAATAATAGAAGTTGTCTCATA TGGAAAAATCTACCTGCTGGCCATGGTGTACAGTTTTTCACAACAATGCTAACATAGCAACAAGCTTTCTTTGGCTTCATGCCATAAGGCAAGTCTTCTA TGAAATAGGTGTATAGTTGTGTGTATATATATATATATAAGAGCAATTTCTTTGTGGTTCATTTTGATGAATAATGTTCTTGATTATGTTTGAGAAGACA ACTATGTTGGTTCTTTTATTTTTCACTTTCCATCTTTATACATATATTTTACTGTCAATATTTTGGATTGCTTTTTAATATATTTGTGAATGCTTATAGA CTCAAAAAAATTTGGGATGTTCTTTAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_193371; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_506105
| Blastp | E3 ubiquitin-protein ligase PRT6 from Arabidopsis with 49.85% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase PRT6 from Arabidopsis with 49.81% of identity |
| Eggnog | Ubiquitin protein ligase E3 component n-recognin 3(ENOG410XRM3) |
| Kegg | Link to kegg annotations (AT5G02310) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019450222.1) |
| Pfam | Putative zinc finger in N-recognin (UBR box) (PF02207.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |