Ll_transcript_506094

• Id Trinity: TRINITY_DN52515_c1_g1_i2
• Name Transcript: Ll_transcript_506094
• Sequence: GAATGATACAGCAAGATGAAGAGCAGAACAAAAGACACCTGAATGAGTGTAATAGCTATATATAGAATCATCTTCATAGTTTACCAATGATTCTGTATCT CACATCAAAATTTCATGATTTTCAGAAATCCAATTAGGGTTTTCAAAAGGGTTCATCTCTTCTTCCACTATAAGCTATAAATTGAGAATTGAAATAGCTT CTTCAATTCTCATAATCAACAAAACTTGTGTAGTGAAGTCTTTGGTTTCGGTCTTCGCTCTCTTATTTTCTTCTCTGACACTCTCTCATGGCCGATGATA TGGAAATCGATTCACCCTCTGGTTCCCAAACCCTCAAACCCCGTGATCGAATTGTTAAGAAGCTTGCTCACTTTGGAGTTCCTGAGGAGCAGCTTGACCA GCCTGGTTTGGTTGCTTTTGTTAAGGATAAGAGGGAGTTGATACCTGAGCTGGTGTCTGTTATATTGCCTACTGATGTGGAAGTGGGTGAAGCATTGCCG GATTCTAAATCGGGCTCGAAGAAATTGCCGTTGGGTGTTACTATGAAGAAGACTTTCCGTCATAGCATGGTGTGGTTGCAGTGGCTAATGTTTGAGGGTG ATCCTGGTGCTGCCCTGAAAGGCCTTTCTGAGATGTCTGTTGGGCAGAGGGGTGTGTGTGGGGATGTTTGGGGACATAATGATATAGCTTACAGGTGCAG GACCTGTGAGCACGATGGGACTTGTGCAATTTGTGTTCCTTGTTTTGAAAATGGGGATCACAAGGGCCATGATTACTTTGTTATATACACAGGTGGTGGG TGTTGTGATTGTGGGGATGTGACGGCGTGGCAACGCAAGGGTTTCTGCTCGAAGCATAAGGGTGTCGAGCAGATACAGCCTCTTCCAGAGGAATTATCAA ACTCTGTTGCACCTGTGCTTGGTTCTCTATTTATTTGTTGGAATGCCAGACTAAAGTTTGCAAGTGATTCTGCCATGTCTGCAGAAAGAAAGAAGGCTGG AAATGAGCTAACTTTTGCTGTAGTTGATATGCTTTTAGAATTTTGCAAGCATAGTGAGAGTTTGCTAAGTTTTGTTGCTAGGTCATTGTTCTCTTCTACT GGTTTATTGAACATCCTAGTGAGAGCTGAGAGGTTTTTAGCTGATGTTGTTATAAGGAAACTCAATGAGCTACTCTTGAAATTATTGGGTGAACCTATTT TTAAGTATGAGTTTGCCAAGGTTTTTCTCGCTTACTATCCAACTGTTGTAAATGAAGCCATAGAAGAGTGCAGTGACCAACCTCTAAAGAAGTACCCTCT GCTGTCCACATTCTCCGTGCAAATACTTACAGTGCCCACCCTTACCCCACGTCTTGTGAAGGAAATCAACCTACTAGCCATGCAGTTGGGATGTTTAGAG AAAATTTTCAATTCTTGTTCAGAGAATGGTCGCTTGCAGATTTCCAACTGGGCAAATTTGTATGAGACAACAATATGTGTTGTCAAAGATATTCGTTTTG TTATGAGCCATGTGGTGGTGCCCAAATATGTAACCAATGACCAGCAGGATATCTCAAGAACATGGATGAGACTCCTGTCCTTTGTGCAAGGGATGAACCC TTCGAAGCGAGAAACAGGTCAGCATATAGAAGAAGAAACTGAAAATGTCCATTTGCCTTTTGTTTTAGGCGACTCTATTGCCAATATTCATTCTCTATTG GTGGGTGGGGCATTTTCTGATTCCAGCAAGGGAGGGATGGAGGATGAAATTGTTTGGATCTCAGAAAAGCATGAAACAGATGATGGAGATAATGTAAGAA ATACGAAGGTAGGGCGGCTATCCCAGGAAAGCTCTGCATGTTGCGTAACAAGTAATAACAGCGCCTTTGCTTCACCAAAGGTTCCTGAGATAGAATCTGA TGCCTCTTCTCCTTTTGATCTTCCACATTCTGTCACTTGGTTGATATATGAGTGTTTAAGGGCTATTGAGCATTGGTTGGAAGTTGAGAATACCCCAGGT TCACTTCCTAACATGTTTAACAGTGATAGTGTCTATGATGGCAATTATTCAGCATTTAAGAGAACAATATCTAATTTCAGAAAGGGTAAATATACTTTTG GTAAGCTTGCAAGTTCAAGCGAAGACTATGGTAAGCGATGCTCTGATTTCAGTCTTGATGGCTCGGAAATGGGTAAAAATATAGTGAAGGATGGTAAACT GAAAACAAATGGTGAAATTGATTCTGAAAACACCAGCACTTATCTTGGTTTTGATAATAATGCAACGGAAGAGGATTTTCCTGCAGAATCAGATTGTCTA CGTTTTTTATCGTCACCTGATTGGCCACATATTGTCTATGATGTTAGTTCACAAGATATATCTCTACACATTCCATTACATAGATTACTATCTATGTTGT TACAGAAGGCACTAGTAATATATTTTAATGAATCCAAAGTGCATGATGTGACCGATGATTGTTCTACTAACTCATTGTCAACAATCCGCGTTGACTTCTT CGGACGTGCTTTACGTGGAACTCATCCTCATGGTTTCTCTTCCTTTATAATGGAGCATCCACTGCGGATAAGAGTATTTTGTGCTGAAGTTCATGCTGGA ATGTGGCGAAAAAATGGAGATGCTGCTTTACTATCTTATGAATGGTATAGATCAGTACGCTGGTCTGAACAAGGTCTGGAGCTTGATCTATTTCTTCTTC AGTGTTGTGCTGCATTTGCTCCAGAAGATCAATATGTCAGTAGAATTCTAGATCGCTTTGGATTATCAAACTACTTGTCTCTGAATCTTGAACGGTCTAG CGAGTATGAACCTGTTTTAGCTCAGGAAATGCTTACTCTTATTATTCAGATAGTAAAAGAAAGGCGCTTTTGTGGGCTAAATACTGCTGAAAGTTTGAAA AGAGAACTAATTTATAAGTTAGCCATTGGAGATGCTACTCATAGTCAATTAGTAAAGTCTCTTCCTCGTGATCTCTCCAAGTTTGAACAGCTTCAAGACA TTTTGGATACTGTTGCTGTTTATTCTAATCCATCTGGCTTTAATCAGGGCATGTATTCTCTGAGGTGGCCATTTTGGAAAGAATTGGATTTGTATCATCC TCGTTGGAACTCGAAGGATTTACAAGTTGCTGAAGAAAGATACGTACGTTTCTGTGGTGGCTCTGCATTAACTACTCAGTTGCCCCAATGGACCAAAATT CATCCTCCCCTGAAGGGGATAGCTGGAATAGCCACCTGCAAAGTTGTTTTACAGATAATCCGTGCCGTCCTATTTTATGCTGTTTTCACTTTTAAATCTG CTGAATCTCGTGCTCCTGATGGTGTTCTCTTACCTGCACTGCATTTGCTATC
• Tissue: pods
• Gene name: LI_gene_193371;
• Additional information: details;

Expression of Ll_transcript_506094

FPKM

• PAB: 0.4
• PNAB: 3.5
• PS1: 5.1
• PS2: 3
• PS3: 4
• PW1: 2.5
• PW2: 3.5
• PW3: 3.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_506094

• Blastp: E3 ubiquitin-protein ligase PRT6 from Arabidopsis with 54.32% of identity
• Blastx: E3 ubiquitin-protein ligase PRT6 from Arabidopsis with 54.32% of identity
• Eggnog: Ubiquitin protein ligase E3 component n-recognin 3(ENOG410XRM3)
• Kegg: Link to kegg annotations (AT5G02310)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019412985.1)
• Pfam: Putative zinc finger in N-recognin (UBR box) (PF02207.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;