Ll_transcript_506673

• Id Trinity: TRINITY_DN52540_c0_g1_i1
• Name Transcript: Ll_transcript_506673
• Sequence: GAGATTCTTGCCCATCTCCTTTTCCCTAAAATCTCCAACCTTTTCCACCAAAACCCTACTCCTTCATTTCCCGCCCTACACAAATAAACCCTTGATGAAG CTTCCATCTTCTCCTTGAGCCAGCGCCCCACAACACCACACCACACCACACCAAACCCTTTTTCTCATTTCCCTCTCTCACATTGTTTCATCACTGCCAC GTGGCACCATGGTTTCTCCGAAGCAACTCCTCTCCACACTTGAATCAACGCTTCTCGGACCTTCGCCTCCAACCGCCGCGCAGCGCGTCGAACTCTTGCA CGCTATTCGCACTTCTTCACGTTCCTTCCAATCTCTTCTATCCTATTCGGACCCTAAGTCCTCTGATCTAAGTCAGGTTCAGTCTAAATCAGTTAGGCTT CCAGATTCTTCGCCTATCTCTCTCGATGACCAGGATGTCCAAATTGCACTCAAATTGAGTGATGATCTCCATGTCAATGAAGTAGATTGTGTTCGCTTGC TTGTATCAGCTAATCAAGAGTGGGGCTTAATGGGAAGGGGACCACTGGAAATTCTACGGCTTGCAGCGGGGCTCTGGTATACAGAGAGAAGAGATCTGAT AACATCCCTCCATTTGCTGTTAAGGGCTGTGGTGCTTGATCAGGGTCTTGAAGATGATATATTGGTTGACATTCAGAAATATCTGGAACATCTTATCAAT TCTGGACTAAGACAGCGGTTGATTTCTCTTATCAAGGAACTCAATAGAGAAGATTCTTCTGGTTTGGGTGGTCCCCAGTGTGAGCCTTACATTCTTGATT CAAGAGGTTCTCTTGTGGAGCGGCGGGCAGTGGTCTCTAGAGAAAGACTTATTATTGGACATTGCCTTGTCCTTTCAGTTTTGGTTGTTCGGACAAGTCC AAAGGATGTGAAGGATATTTTTTCTGTTTTAAAAGATTGTGCTTCCGAAGTCAGTGTGTGCAATACCACGGTAAAACATCAGATTACCTTCAGTCTTCTT TTTGCTCTTGTGGTTGCATTTGTTTCAGATGGTTTGAGTACAGTGCCGGATAAAGCATCTATACTTTCTTCTGATGCTTCCTTCAGACGTGAATTTCATG AACTTGTAATGGCTACCGGAAATGATCCAGTTGTTGAAGGCTTCATTGGTGGCATTAGACTTGCTTGGGTGGTACATTTGATGTTAATACAAGATGGTGT TGCAGCAAGGGAGACTGTTTCAAGTGGTTCATCAAATGAAATGGGTTATCTCAGTCAATGCTTGGATGTCATTTTCTCAACTAACAGTTTTCAATTTTTA TTGGACAAAGTTCTTCACACAGCTTCTTACCAGAATGAAGATGAAGATATGATCTACATGTATAATGCTTATCTTCACAAGCTGATCACCTGCTTCTTGT CTAATTCACTTGCGAGAGACAAGATAAAAGAATCCAAGGAGCGGACAATGAGTGTGCTTAGTCCATACCGAGTTGTTGGATCACATGATTTTGCACAGGA CAGGAACTCAAGTTCTCAACATGGCTCTGACATGGGTGCTTTAACATTTAATTCAATATTGGACTTTGTGAGCGAAATTTATCAGAAAGAACCAGAGCTG TTGTCTGGAAATGATGTGTTGTGGACATTTGTAAATTTTGCCGGAGAAGACCATACAACCTTCCAAACACTTGTGGCTTTCTTAAATATGCTGAGCACCT TGGCTTCTAGTCAAGAAGGTGCTTCTAAGGTTTATGAGTTGCTGCAAGGTAAAGCATTCCGCTCAATTGGGTGGAGCACTTTGTTTGAATGCTTAACAAT TTATGATGATAAATTCAAACAGTCTCTTCAAACTGCTGGAGCGATGTTGCCTGACATTCAGGAGGGGGATGCAAAAGCCCTCGTGGCATACTTAAATGTT CTGAAGAAGGTTGTAGAAAATGGGAACCCAATAGAAAGGAAAAACTGGTTTCCTGATATTGAACCATTGTTCAAGCTTCTTAGTTACGAAAATGTACCCC CATATCTTAAGGGTGCTCTACGGAATGCAATAGCCACATTTATTCATGTCTCTCCAGTGTTGAAGGATAGCATTTGGACCTATCTTGAACAATATGACCT GCCAGTAGTTGTTGGGACAAATGTCCAGAATACTCAACAACCCGTGGGTACTCAGGTTTATGATATGCAATTTGAATTGAACGAAATCGAAGCAAGGAGA GAGCAATATCCTTCAACTATATCTTTTCTTAATTTGATAAATGCTCTTGTTGCAGAAGAAAGAGATTTGAGTGATAGAGGGCGAAGATTTATTGGCATAT TTAGGTTCATATATGATCATGTTTTTGGGCCATTTCCTCAGAGAGCCTATGCAGATCCTTGTGAAAAGTGGCAGTTGGTTGGTGCTTGCCTTCAACATTT TCGCATGATATTAACCATGTATGATGTCAAGGATGAGGACTTTGAGGGTATAGTTGACCAGTCACGACTTTCAACAACGAAAGAATCATCACCACTTCAG ACACAACTTCCTGTATTAGAATTGCTTAAAGATTTCATGAGTGGTAAGACTGCATTTCGGAACATTATGGGTATTCTTCTACCAGGAGTGAATTCCATCA TTGCTGAACGCAGTAGTCAAATATATGGGCAGCTTTTGGAGAATGCAGTTCAGCTTTCTCTGGAAATTATAATACTAGTGCTTGAAAAAGATTTACTTCT TTCTGATTATTGGCGTCCTCTATACCAGCCATTGGATATTATACTCTCCCATGATCACAGTCAAATAGTGGCTTTGTTGGAGTATGTCAGATATGATTTT CAGCCAAAAATTCAGCAGTCCTCTATCAAAATCATGAGTATTCTAAGCTCTCGGATGGTTGGGCTCGTTCAGCTATTGCTAAAATCTAATGCTGCAAACA GTTTGATAGAAGATTATGCAGCCTGCCTTGAGTTGCGGTCAGAAGAATCTCAGACAGTTGAAAATAACACTGATGATCCAGGCATTCTTATTATGCAACT TTTAATTGACAACATCAGCAGGCCAGCTCCAAATATCACTCATTTACTACTTAAATTTGATCTAGACATGCCTGTTGAGCGAACAGTTTTACAGCCTAAG TTTTATTACAGTTGCATGAAGGTTATTCTTGATATGCTGGAGAACCTTTTAAAGCCTGATGTGAATGCATTGCTTCATGAATTTGGTTTTCAGCTACTTT ATGAACTATGCATTGATCCACTAACATGTGAACCTACAATGGATTTGTTATCAAATAAAAAGTACCATTTCTTTATTAAGCACCTTGATACAATTTGTAT TGCTCCACTTCCTAAACGGAATAGTAACCAGCCTCTTCGTATCAGTTCGCTTCATCAGAGAGCATGGCTTTTAAAACTTTTAGCTGTTGAACTACATGCT GGTGATGTTAGTAGCTCCACACATAGAGAAGCATGTCAAACAATCCTCTCTCACCTTTTTGGACAAGATATGCTTGAAATTGGTGGAGGGCAGGCTATGT CTCCATTTTCGCTTCAAGCTACTTATGAAAATGCTGCTATAAGAACTGTCAGTAAGAGTAAGGTATTAGAATTGCTAGAAATTATCCAGTTTAGATGTCC AGATGCTTCTAAGCTCTCAAATATTGTGGCTGGTATGAAGTATGACTTGCTGGCTGAAGACATACTTGGAAATCCTGGAAATTCTGGAAAGGGTGGTGTC TACTATTATTCGGAGAGAAATGATCGTCTAATTGACCTTGCTTCCTTCCATGACAAACTTTGGCAGGCAAGTAACCTAGGCAATGAAGTTGAGCTAAACG ATGTACGAGAGACAATTCAACAGTTGCTGAGATGGGGGTGGAAATACAATAAAAATCTGGAGGAACAAGCTGCACAACTACATATGGTTACTGCCTGGTC TCAGATTGTTGAGGTGTCTGCGTCAAGAAGATTAGCAATGCTTGAAGATCGATCTGAAATTCTATTCCAGGTTCTTGATGCATCTCTTAGTGCTTGTGCG TCTCCCGATTGTTCATTGAAGATGGCATTCATATTATCACAGGTAGCGTTGACATGCATGGCTAAACTACGAGATGAAAGGTTTTTGTTCCCTGGCAGCC TGAGTTCTGATAATATCACGTGCCTGGATCTCATTGTGGTGAAGCAATTATCCAATGGTGCTTGTCTGACCATATTATTTAAGCTCATTATGGCAATTCT TAGAAATGAATCATCAGAAGCTCTTCGGAGACGTCAATATGCCTTGCTTCTTAGCTATTTCCAGTATTGTCAAAATGTGGTTGATCCAGATGTTCCAACC ACAGTGCTTCAATTCTTGCTGCTCAGTGAACAAGATAATGAATACATTGATCTGCCAAAGATTGACAAAGAGCAGGCAGAATTGGCTCGTGCAAATTTTT CTACTTTAAGGAAAGAGGCTCAAAGCATCTTAGATTTGGTCATAAAAGATGCAACCCATGGCAGCGAACCGGGAAAGACAATATCACTCTATGTTCTTGA TGCATTGATTTGTATAGACCATGAGCGATATTTCCTGAACCAGCTTCAAAGTAGGGGCTTTTTAAGGTCATGCTTTACAGCCATAAGCAGTGTTTCAAAT CAGGATGGTGGTCTTTCACTGGACTCATTGCAGAGGGCATGTACCTTTGAGGCTGAACTTGCATTACTACTAAGAATTAGTCACAAATATGAGAAATCAG GAGCACAGGTACTATTTTCTATGGGTATACTGGAGCATCTTTCTTCTGGAAGGGTAATCAGTTCACAGGGAGGTTTAAGGAGGGTTGAGACAAGACTTAG AAGAGATATGGCTAACGACATTGATCGACAACGAATGATTGTAACTCCCATTTTGAGATTAGTCTTTTCGTTAACTTCCTTGGTTGACACATCGGAGTTT TTGGAGATGAAGAATAAAATTGTTGGTGAAATAATTGATTTTGTCAAAGGGCATCAACCACTCTTCGATCATATTCTCCGTGTTGACATTGCTGAAGCAG ATGACTTGAGAATGGAGCAGATCAATCTAGTTGTTGGTATTCTTAGCAAGATTTGGCCCTATGAAGAAAGCAGCGAGTATGGTTTTGTTCAAGGGCTGTT TGGCATGATGCATGCTCTTTTCTCTCGTGACTTGAAGGTTCCTAGTTTTGCTCAATCAATATCACCTAAGAATCAGAGGAATTCAGAACTACAGATGTTT AAGTTATGCTTCAGCCTGAGTTCTTACTTATATTTTCTGGTCACAAAGAAATCATTGAGGTTGCAGTCTTCAGATGCCACCTCCAGTTACCCAACTTCCG TTGAACTTCAACAACCCACATTGAGCTTGCTTAATTCCCTTCTCACTTCTGTTACAACTGCACTTGAAAGGGCTGCTGAGGAAAAATCACTACTACTGAA TAAGATACGAGACATAAATGAATTGTCAAGGCAAGAGGTGGATGAAATCATCAATATGTGTGTGCAGCAAGACTATGTTCCATCTTCAGACAACATACAT AAAAGGAGATACATTGCAATGGTAGAAATGTGTCAAGTTGTTGCTAGTTGGGATCAACAAATCATTTTGTTACTCCCTCTCTCTGAACATGTGCTGAATA TCATCCTCATTCATCTTCAAGAGAGCTGTGTTGCATCTGATTCTACTTTGACCACAAAAACAATTGCATACGGTGCGAAGTATGATCCGAAACAGGACGT CGCGTTTTTATGTGGAAAGTTAGTTCCAGACCTTGAACGACTCGAGTTACTGAGTGAGGACAAAATTGGGCGCAATCTCAAAGTATTCCACAGATTAGTA AGTTCTGCTAAAGATGTAGCAATTCAAAAGTTGGTTTTGTAGGTATATCAAATTATCCGCACACATCCAATTTTTTCCTTTAATTAACTGCTTGTGTTGT AAAATGTATCAATCTGTAAGATGTGCTCTTTAATTAGTTCTCGAGCGAGACTTGTATGATGGGTGATGTTATATCCTGTTTAATCTTGGTATATTTAAGT AGAAGTTTATGCACAATATTATATTTTACATATATCGTTGCAAAGATATGAAAGTGGGGTTGCCATTAAGTGAAATTAGTATTATGGGAATTTAAACCTT TCCCTTTGCTGATGCCGGGTTTTACTAAACATTTAC
• Tissue: pods
• Gene name: LI_gene_193565;
• Additional information: details;

Expression of Ll_transcript_506673

FPKM

• PAB: 0
• PNAB: 10.7
• PS1: 8.3
• PS2: 5.2
• PS3: 8
• PW1: 6.2
• PW2: 3.5
• PW3: 1.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_506673

• Blastp: Nuclear pore complex protein NUP205 from Arabidopsis with 65.94% of identity
• Blastx: Nuclear pore complex protein NUP205 from Arabidopsis with 65.89% of identity
• Eggnog: nuclear pore complex protein(ENOG410XSBR)
• Kegg: Link to kegg annotations (AT5G51200)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019417065.1)
• Pfam: Nuclear pore complex scaffold, nucleoporins 186/192/205 (PF11894.7)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;