| Id Trinity | TRINITY_DN52540_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_506674 |
| Sequence | TTTTCATCATGTCCAGATACTACTACTTCCTCTGATCTGCAATATTTTTACCACCTAAACCCTACTAATTAATTTCCCGCCTAGGACCTATAACCACTTG AACCTTCCATCTTTCTAAAAGACTCATCATTCCACAACACACGAACTCACTCAACCATTTTCTCATTTCCTCTCTCTCTCTCTCGCTTTCTCTAGGGTTT CGTAACCGCCATGGTTTCTCCGAAGCAGCTTCTATCCACACTCGAATCAGCGCTTCTCGGACCTTCGCCTCCGACTGCGGCGCAACGCGTCGAACTCTTG CACGCTATTCGCACTTCCTCCCGTTCATTCCAATCCCTTCTATCCTATCTGCCTCCAAAGTCCTCCGATCGAAGTCAAGTTCAGTCAAAATCAGTTAGGC TTCCAGATTCTTCGCCTATCTCTCTTGATGATCAAGATGTCCAAATTGCACTCAAATTGAGTGATGACCTCCATCTCAATGAAGTAGATTGCGTTCGCTT GCTTGTATCAGCTAATCAAGAGAGGGGCTTAATGGGAAGGGAACCTCTGGAAATTCTACGGCTTGCAGCGGGGCTCTGGTATACAGAGAGAAGAGATCTG ATAACATCCCTCCATTTGCTGTTAAGGGCTGTGGTGCTTGATCAGGGTCTAGAAGATGAAATATTAGTTGACATTCAGAAATATCTGGAACATCTTATCA ATTCTGGACTAAGACAGCGGTTGATTTCTCTTATCAAGGAACTAAATAGAGAAGAGCCTTCTGGTTTGGGTGGTCCTCAATGTGAGCATTATGTTATTGA TTCAAGAGGTTCTCTTGTGGAGCGGCAGGCAGTGGTCTCTAGAGAACGACTTATTATAGGACATTGCCTTGTGCTTTCAGTCCTGGTTGTTCGGACAAGT CCAAAGGATGTGAAGGATATTTTTTCTGTTTTAAAAGATTGTGCTTCCGAAGTTAGCCAGAGCAATACCACTGTAAAACATCAGATACATCATGAAATAA GAGAGGAGGAAAGAAGGAAGAAGAGAGGATAGCTGCAATATTTGAGAAGAATAAATTTGAGCATCTCGAAGGCATGAATGGAAAAGTATAAGATGAAATT ACCTTCAGTATTCTTTCGCTCTTGTGGTTGCTTTTGTTTCAGATGGTTTGAGTACAGTGCCAGATAAAGCATCTGTCCTTTCTTCTAATGCTTCATTCAG ACGTGAATTTCATGAACTTGTAATGGCCACTGCTAATGATCCAATTGTTGAAGGCTTTATTGGCAGCATCAGGCTTGCTTGGGTGGTACATTTGATGTTA ATACAAGATGGTGTTGCATCAAGGGAAATTGTTTCAAGTGGTTCATCAAATGAAATGGGTTATCTTAGTCAATGCCTGGAAGTCATTTTCTCAACTAATG TTTTTCAGTTTTTACTTGACAAAATTCTTCGTACTGCTGCCTACCAGAATGAAGACGAAGATATGATCTATATGTATAATGCTTATCTGCACAAGCTGAT TACATGCTTCTTGTCTAATTCACTTGCGAGAGACAAGATCAAAGAATCGAAGGAGCGGACAATGAGTGTGCTTAGTCCATACCGAGTTGTTGGATCACAG GACATTAACTCAAGTTCTCAACATTGTTCTGAAATTGATGCTTTAACTTTTAATTCAGTCTTGGACTTTGTGAGCGAAATTTATCAGGTCTGTTTTACTA AATGTCAGCATGATATATGTAATGTTTGTATTCTTGTATGAAGCAATCAATGCAAGTTTTGAATAGATCTCAGCACTCACATTTTCTACTAATTCATAAG TTTTGTTGCTGCTGTCCTTACTCCAAATGATTGAACCAAGTCTATGTATTTGCTGTTAAGAAAGAAAATGGGAATTTTGAAAAAGCAACATCATTGGTCA GCTTTTGTATGTGTCGGTATAAATAGGGGTTTAGGTTTATGTTTTTTGTAACACAATCATATTATCATTTACAATCATATCAATACAATTTACTATTTCA GCGTTCCTTTTATATCCTTCTACACCTAAACCCTATAATTTAACGGTATGAACTATATTTTTAATGATTTAAATTGCCTTGAAATGTGCTTGCCTTTTGT GGCTTATCCTTGTGATCATGATCTTGAGTTTTGTCTCAAGTTATAGAAAGAACCAGAGCTCTTATCTGGAAATGATGTGATATGGACATTTGTAAATTTT GCTGGAGAAGACCATACAAATTTCCAAACGCTTGTGGCTTTCTTAAATATGCTGAGCACCTTGGCTTCTAGTCAAGAAGGTGCTTCTAAGGTTTATGATT TATTGCATGGTAAAGCATTCCGCTCAATTGGGTGGAGCACTTTGTTTGAATGCTTAGCAATTTATGATGAGAAATTCAAACAGTCTCTTCAAACTGCTGG AGCGATGTTGCCTGAAATTCAGGAGGGGGATGCAAAAGCACTTGTGGCATACTTAAACGTTCTAAAGAAGGTTGTGGAAAATGGGAATCCAATAGAAAGG AAAAACTGGTTTCCTGATATTGAAGCATTGTTCAAGCTTCTTAGTTATGAAAACGTACCCCCATATCTTAAGGGTGCTCTAAGGAGTGCAATAGCCACAT TCATTCCTGTCTCTCCAGTATTGAAGGATAGCATTTGGACCTATCTTGAACAATATGATCTGCCAGTTGTTGGGCCTGATGTCCAGAACAGTCAACAGCC CATGGCTACTCAGGTTTATGATATGCAATTTGAACTAAACGAAATTGAAGCAAGGAGAGAGCAATATCCTCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_193565; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_506674
| Blastp | Nuclear pore complex protein NUP205 from Arabidopsis with 68.34% of identity |
|---|---|
| Blastx | Nuclear pore complex protein NUP205 from Arabidopsis with 68.22% of identity |
| Eggnog | nuclear pore complex protein(ENOG410XSBR) |
| Kegg | Link to kegg annotations (AT5G51200) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419243.1) |
| Pfam | Nuclear pore complex scaffold, nucleoporins 186/192/205 (PF11894.7) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |