| Id Trinity | TRINITY_DN52542_c2_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_507105 |
| Sequence | CGTGGAACACCTTTCTTCTTCGCCACTGTAATTACTCTTATATCCAATATAATATAATAATCATCACAACGTGTTTTCTCTCTCACTAACTTTCTCTCTC TCTCTTCTTTCTCTGTAACGGTTACACTCAACTGTAACCACCACACCTTCAGCTTCAGCATTTAGTTCCCGATATCTTCTTCTAGGGTTTTCAATTTCGA TGCTATGAGTGCTGGCCACCGTAACGCTCCGCCAACTGTGCCGGCGACTCCACCGCCGGAGGAAGAACCATACAACATAATCCCTGTCCACAATCTCCTC GCTGATCACCCTTCCCTCCGCTTCCCTGAAGTCCGCGCCGCCGCCGCCGCTCTCAACGCCGTCGGAGACCTCCGACGACCTCCATTTGCGCAATGGCAAC CACATTTCGATCTTCTCGACTGGCTTGCTCTCTTCTTCGGGTTCCAACGCGACAACGTTCGGAACCAGCGCGAACATATTGTTCTCCACCTTGCCAATGC TCAGATGCGGCTCACTCCGCCGCCGGATAACATTGACACACTCGACGACGCCGTTCTCCGCCCCTTCCGCAAGAAGCTTCTTAAAAATTATACTGAATGG TGCTCATATCTCGGAAAGAAATCGAACATTTGGATCTCCAATAACAGTCACCGCCGTGATTCTGATGATCAGCGCCGTGAGCTTCTCTATGTATCTCTCT ATCTCCTGATTTGGGGCGAGGCGGCAAATCTTCGCTTCGTCCCCGAGTGCATCTGCTTCATCTTCCATAACATGGCAATGGAGCTTAATCGAATTTTGGA AGGTTACATTGATGATAGCACTGGTCAGCCTGTGATGCCTTCGATTTCGGGTGAGAATGCTTTTCTGAATATGGTGATTAAGCCTATTTATGATACAATT AAGCGTGAAGTTGATAGTAGTAGGAATGGAACTGCTCCTCATAGTGCTTGGAGAAATTATGATGATATAAATGAGTATTTTTGGAGTAGGAGATGTTTTG ATAAGCTCAAGTGGCCTATTAATCTTGAGAGCAATTTTTTCGTGACTGGTAGTGGTGGAAAGCATGTCGGTAAGACTGGATTTGTGGAGCAGAGGTCGTT TTGGAATCTGTTTAGGAGTTTTGATAGGCTCTGGGTGATGCTGATTCTGTTTCTTCAAGTTGCTATAATTGTGGCTTGGGAGGAGAAGACTTATCCCTGG CAGGCTTTGCAAGATAGGACTGTACAAGTCAGGGCTTTGACTATTATGTTTACTTGGAGTGGCTTGAGGTTTGTGCAGTCTTTGCTCGATTTAGGGATGC AGTATAGGTTGGTTTCCAGGGAGACCATGTTGCTTGGGGTGAGGATGTTTCTGAAAATTATCGTTGCTGCATGGTGGATTGTTGCCTTTGCTGTGCTTTA TGGCAGGATATGGTCTCAGAGAAACCATGATAGACGGTGGTCAGAAGAAGCAAATAGGCGGGTGGTGAATTTTTTGGAGGCGATTGCTGTTTTCGTCATC CCAGAGCTTCTAGCATTAGCCCTTTTTATAATACCTTGGATTAGAAATTTTGTTGAGAATACAAATTGGAGGATTTTTTACCTGTTATCGTGGTGGTTTC AGAGTAGAATTTTTGTTGGCCGTGGATTGAGAGAAGGGCTTGTGGACAACATTAAGTATACATCGTTCTGGGTTGCTGTGTTGGCCACAAAATTTTGCTT CAGCTACTTCTTACAGGTCAAACCCATGATTGCTCCCACAAAGGCAGTGTTGGCACTTAAGGATGTTAAGTATCAATGGCATGAGTTTTTTCAAAACAGT AACCGATTTGCGGCTGTTTTACTGTGGATTCCGGTTGTGTTGGTGTATCTGATGGATATACAAATTTGGTATTCAATATATTCATCTTTTGTTGGGGCGG CTGTGGGGTTGTTTGCACACTTGGGTGAGATTCGAAACATGCAGCAGCTGAAATTGAGGTTCCAGTTTTTTGCCAGTGCAATTCAATTTAATCTCATGCC GGAGGAGCAATTGTTGAATGCAAGAGGAACATTGGCGAGCAAGTTTAGAAATGCCATCCACAGGTTAAAGCTCAGGTATGCAGAGGTGAATGGAGGGGGG GACCGAGGTAGGCCAAGGTCTCCCCCTATTTTGTTATGTTTTCATGCATTCCTTTATGTTTGATTTGGCTCCTGCCCCTGCAGGTATGGACTCGGACGGC CCTATAAGAAGATTGAGTCTAACCAGGTTGAAGCCAACAAGTTTGCTTTGATATGGAATGGAATAATTATGTCGTTCAGGGAGGAGGATATCATCTCTGA CAAAGAGGTTGAGCTGCTGGAGCTACCACAGAACTCTTGGAATGTCAGGGTTATCCGGTGGCCATGTTTTCTTCTCTGCAATGAGTTACTGCTGGCACTC AGTCAGGCCAAAGAACTAGTTAATGAAACTGATAAGAAGCTTTTTAATAAGATATGCAAGTATGAGTACCGACGCTGTGCTATCATCGAGGCATATGATA GTGTCAAGCACTTGCTTCTTGAGATCATCAACACCAATAGTGAAGAGCATTCTATTGTAACAGTTCTGTTTCAAGAAATTGATCACTCTCTTGAGATTGA GAAATTCACTAGAACATTCAAAACGACTGCACTGCCTCTGCTCCACAACAAGTTGATAAAGCTTGTTGAGTTGTTGAACAAGCCCAAGAAAGATCTGAAC CTAGTCGTGAATACTCTCCAGGCCCTTTATGAGATTGCTACCCGAGATTTTTTCAATGACGAAAGGAAGATTGATCAGCTAAGGGAGGATGGTTTAGCTC CACGCAATCCTGCTTCAGGTCTACTTTTTGAGAATGCTGTTCTGTTGCCTGACACCAACAATGTGAACTTCTATCGGCAGGTTCGGCGCTTGCACACAAT TCTTACCTCCAAGGATTCAATGCAAAACATCCCAATAAATCTAGAAGCTAGGCGTAGGATTGCCTTCTTCAGTAACTCTCTTTTTATGAAAATGCCCCGT GCTCCCCAAGTTGAGAAGATGATGGCTTTCAGTGTTCTAACACCTTACTATAGTGAAGAAGTAGTTTTCAGTAAGGAACAGCTCAGAACTGAGAATGAAG ATGGGGTATCAATCCTGTACTATTTGCAGACTATATATGATGATGAGTGGAAGAATTTTGTGGAGAGGATGCATCGGGAGGGGATGATGAAAGACAGTGA TATTTGGACTGATAAACTTAGAGATTTGAGGCTCTGGGCATCCTACAGAGGCCAGACACTATCCCGGACAGTAAGAGGGATGATGTACTACTATCGGGCT CTGAAGATGTTGGCTTTTCTGGATTCCGCATCAGAAATGGATATCCGAGATGGCTCACGTGAACTTGTTGCAATGAGGCATGATAGTTTAGATGGTTTCA ACTCTGAAAAGTCACCTGCCTCTCGGAGTTTAAGTAGAACAAGCAGCTCAGTAAGTTTGTTATTCAAAGGCCATGAGAATGGGACTGCTTTAATGAAATT CACATATGTGGTTGCTTGCCAGATATATGGTACTCAGAAGGCAAAAAAAGATCCCCATGCTGATGAAATCTTGAGTCTAATGAAAGAAAATGAAGCCCTT CGAGTTGCCTATGTTGATGATAAAACCACTGGAAGGGACGAAAAGGAGTATTACTCTGTTCTTGTTAAGTATGACCAACAATTACAGAGGGAGGTGGAAA TTTACCGTGTAAAGTTGCCTGGTCCCTTGAAGCTTGGAGAGGGAAAGCCAGAAAATCAAAATCATGCCTTTATCTTTACCCGTGGTGATGCAGTCCAGAC TATTGATATGAACCAGGACAACTATTTTGAGGAGGCACTTAAAATGCGAAATCTCTTGGAAGAGTATAGGCATTACTATGGCATCCGTAAACCTACTATT TTGGGAGTTAGGGAACATATTTTTACTGGTTCTGTTTCCTCTCTTGCTCGGTTCATGTCAGCTCAGGAATCAAGTTTTGTCACTTTAGGACAAAGGGTTT TGGCAAATCCTTTAAAAGTTAGAATGCATTATGGTCATCCAGATGTGTTTGACAGGTTTTGGTTTTTAACTCGTGGTGGCGTCAGTAAAGCTTCCAGGGT GATCAACATAAGTGAGGACATTTTTGCTGGCTTTAATTGTACTCTTCGTGGAGGTAATGTCACTCACCATGAATACATTCAGGTCGGAAAGGGAAGAGAT GTTGGGTTGAATCAAGTATCAATGTTTGAAGCAAAGGTTGCCAGTGGAAATGGGGAGCAAGTCCTGAGCAGAGATGTGTACAGATTGGGTCACAGACTGG ATTTTTTCCGGATGCTATCATTCTTCTACACTACTGTTGGGTTCTTCTTTAACACAATGATGGTTGTTCTGACTGTATATGCATTTTTATGGGGCCGATT ATATCTTGCCCTTAGTGGTATTGAGGCTGAAATGCAAAGTAACAGCAATAACAATAAAGCACTTGGTACCATCTTGAATCAGCAATTCATCATTCAACTT GGTATTTTCACTGCACTTCCAATGATTGTAGAGAACTCTCTTGAGCATGGTTTCCTTCATGCTATATGGGATTTCTTAACAATGCAACTTCAGCTTTCAT CAGTTTTTTACACGTTTTCAATGGGTACTCGTAGTCATTTTTTTGGCCGGACTATTCTTCATGGTGGGGCAAAATATCGGGCTACTGGTCGTGGTTTTGT TGTTGAGCACAAGAGTTTTGCTGAAAACTATAGACTCTTTGCTCGTAGCCATTTTGTGAAAGCAATTGAATTGGGGCTAATACTTATAATTTATGCAACA CACAGTCCTGTAGCAACTGACACGTTTGTTTATATAGGCATGACCATAACTAGTTGGTTCTTGGTTGTATCGTGGTTTATAGCACCATTTGTGTTCAATC CTTCAGGCTTTGACTGGTTAAAGACCGTCTATGATTTTGATGACTTTATGAGCTGGATTTGGTACAGAGGAAGTGTGTTTGCTAAAGCTGAACAGAGCTG GGAAAGGTGGTGGTACGAAGAGCAGGATCATCTAAAGGTAACTGGCCTTTGGGGAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_193575; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_507105
| Blastp | Callose synthase 12 from Arabidopsis with 77.6% of identity |
|---|---|
| Blastx | Callose synthase 12 from Arabidopsis with 73.72% of identity |
| Eggnog | synthase(ENOG410XQ8V) |
| Kegg | Link to kegg annotations (AT4G03550) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413240.1) |
| Pfam | 1,3-beta-glucan synthase component (PF02364.14) |
| Rfam | snoJ33 (RF00315) |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |