Ll_transcript_505767

• Id Trinity: TRINITY_DN52550_c0_g1_i17
• Name Transcript: Ll_transcript_505767
• Sequence: CACTCTCTCTCTCTCTGTAATGGAGCTTCGCTTACGGTTTCTGACTTCACTCTCTCTGTTACAGCTATGTCTCATTTTATCATTCACAAAAGCACACAAT TTATCTACAACCCTTCTTACAACACCGGGGGAAAAGCATTCTGAGAATTATTGTGCAATGTATGACCTTTGTGGAACACGCAGTGATGGTAAAGTATTGA ATTGTCCATATGGTTCCCCAGCTGTGAAGCCAGATGATTTGCTCTCATCGAAGATTCAAAGTTTGTGTCCAAAAATTACTGGGAATGTTTGTTGTACAGA AGCTCAGTTTGACACATTAAAGAAGCAAGTCCAACAGGCAATTCCTTTTCTTGTAGGGTGTCCTGCATGCTTAAGAAACTTTTTGAATCTGTTCTGCGAG CTTACATGTTCTCCAAATCAGAGTTTATTTATCAATGTGACTTCAGCTGACAAGGTTGGTGGTAATTTGACAGTGGGTGCGATTGATTTTTTTGTAGCTG ATGCTTTTGGTGAAGGGTTATTTGAGTCCTGTAAGGAAGTAAAGTTTGGCACCATGAATTCCCGAGCTCTACAATTTATTGGTGCTGGTGCTCAAAATTT TATGGAATGGTTTGCATTTATTGGTAGAAAGGCGGCCCCTAATAGTCCTGGTTCACCATATGCAATTACATTCCATCCAAATGCAAGCAAATCATCTGGC ATGAAACCTATGAATGTTTCAACTTATTCATGTGGTGATGTTTCTCTTGGCTGCTCTTGCGGTGACTGTCCTTCATCCTCAGTGTGCTCTAGTTCACCTT CAACGACCACCCATAAGAGGGACTCCTGCTCCATTAAAGTTGGGTCTTTAACGGTGAAGTGTGTTGATTTGATTTTAACAGTCTTATACATTATACTGGT TTCTGTGTTCTTGGGTTGGGGATTGTATCATCGGATAAGGGAAAGAAAACCAGCATCCCAAACAGGACCGGTGTCTAATATCATTAGTGGTGGTGTGCAG CATTCTTTAGATAGGGAGAAGGATGATAACCTCCCAACGCAGGTTCATATGATGCAAGATGATGCACTAAACAGAAATGAGGTCCGGCTCTCAGCAGTGC AAGGATACATGTCCATATTTTACAGGAAATATGGATCATATGTAGCTAAGAATCCAATTAAGGTCTTGTCTTCATCACTGGCCATATTTCTTCTACTCTG TCTAGGTCTAATTCGGTTCAAGGTTGAAACACGACCTGAGAAGCTCTGGGTAGCACCTGGGAGTAATGCAGCACGAGAGAAACAGTTTTTTGATAGCCAC CTTGCTCCATTTTACAGAATTGAACAGCTCATACTGGCAACAGTTCCAGATCATGTGAATAAAACAGCACCAAGAATTGTGTCAAAAGACAACATTGAGT TTCTATTTGAAATACAAAAAAAGGTTGATGCAATCCGTGCTAATTATTCTGGCTCGATGGTATCTCTCCAAGACATCTGTTTGAAGCCACTGGACAAAGA TTGTGCCACTCAAAGTGTCCTGCAGTACTTCAAAATGGACCCAAATAATTTCGGCGATTATGGGGGAGCTGATCATCTTACTTACTGTTTCGAGCATTAT ACCTCAGCAGACCAATGTCTGAGCAGCTTTAAAGCTCCTCTTGATCCAAGCACCGTGTTAGGAGGTTTCTCTGGGAATAATTATTCTGCGGCATCTGCGT TTGTTGTAACTTATCCAGTAAATAATGCCATTGATGAAGAAGGTAATCAAAATGCTAAGGCAGTTGCTTGGGAGAAGGCCTTTATTCAGTTGGTGAAGGG TGAGCTTTTACCAATGGTGAAATCAAGAAATTTGACGCTTGCTTTTTCCTCTGAAAGCTCGATTGAGGAAGAGTTAAAAAGAGAAAGTACCGCAGATGCT ATTACTATATTGATTAGCTATATTGTGATGTTCGCGTATATATCTCTTACTTTGGGGGATACACCACATCTTTCTTCTTTCTATATTTCATCTAAGGTAT TGCTTGGTCTTGCAGGAGTAATGCTTGTTTTGCTGTCTGTCCTTGGATCAGTCGCACTATTTAGTGCCATTGGTGTAAAATCTACACTGATCATCATGGA AGTTATCCCATTTCTTGTTCTAGCTGTTGGTGTGGACAATATGTGTATACTCGTTCATGCCGTAAAAAGGCAACAAATGGATTTGCCTTTAGAAGGACGA ATAAGCAATGCACTTGTGGAAGTTGGACCATCTATAACACTGGCTAGTCTATCAGAGGTTTTAGCATTTGCAGTTGGAAGCTTTATTTCAATGCCTGCAT GCCGTGTGTTCTCCATGTTTGCTGCATTGGCTGTTCTTTTGGATTTTATCCTGCAAGTTACTGCTTTTGTTGCTCTGATAGTTATCGACTCTTTGCGAGC TGAGGATAAGAGAGTTGATTGTTTTCCATGCATAAAAGTGCGTTCAATGCGTGTGGATTTTGATAAAGGTGTTGGACAAAGTAAACCTGGTTTCTTGACT CGATTTATGAAGGAGGTTCTTGCACCCATTCTGAGTATATGGGGAGTAAAAATAGCTGTCATTGCTATTTTTACAGGATTTGCATTGGCTAGCATTG
• Tissue: pods
• Gene name: LI_gene_193639;
• Additional information: details;

Expression of Ll_transcript_505767

FPKM

• PAB: 0.1
• PNAB: 2.2
• PS1: 3
• PS2: 1.8
• PS3: 3
• PW1: 1.8
• PW2: 0.7
• PW3: 0.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_505767

• Blastp: Niemann-Pick C1 protein from Sus with 35.78% of identity
• Blastx: Niemann-Pick C1 protein from Sus with 35.4% of identity
• Eggnog: Niemann-Pick disease type C1(ENOG410XR54)
• Kegg: Link to kegg annotations (397591)
• CantataDB: Link to cantataDB annotations (CNT0002821)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019414832.1)
• Pfam: Niemann-Pick C1 N terminus (PF16414.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;